Evidence map›Paper›PMID 21183954›Full record

ArticleThe EMBO journal2011

The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A.

Madhusudhan Srinivasan, Preeti Mehta, Yao Yu, Evelyn Prugar, Eugene V Koonin, A Wali Karzai, Rolf Sternglanz

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 169 citations in OpenAlex.

  1. Article
  2. Catalytic and regulatory basis of tRNA tNature communications · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Queuosine tRNA Modification: Connecting the Microbiome to the Translatome.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. TP53RK Drives the Progression of Chronic Kidney Disease by Phosphorylating Birc5.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  15. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Conservation and Diversification of tRNA tInternational journal of molecular sciences · 2022
    Review

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Madhusudhan SrinivasanDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Preeti Mehta
Yao Yu
Evelyn Prugar
Eugene V Koonin
A Wali Karzai
Rolf Sternglanz
Stony Brook University · USNational Institutes of Health · US

Funding

Finding Protein Sequence Motifs--Methods And ApplicationsZIALM000061 · NLM · NATIONAL LIBRARY OF MEDICINE · PI KOONIN, EUGENE V · 2009 to 2025
$10.6M
Wiring of Gene Expression in the Early Meiotic ProgramP01GM088297 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FUTCHER, BRUCE BRUCE · 2010 to 2014
$7.4M
YEAST HISTONE ACETYLATION GENES AND MUTANTSR01GM055641 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 1997 to 2009
$2.6M
Quality Control of Protein TranslationR01GM065319 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI KARZAI, A. WALI · 2002 to 2012
$2.5M
Acquisition of an Applied Biosystems 4000 QTRAP Mass SpectrometerS10RR023680 · NCRR · STATE UNIVERSITY NEW YORK STONY BROOK · PI IDEN, CHARLES R · 2007 to 2007
$435k
NCRR NIH HHS 1 S10 RR023680-1NCRR NIH HHS S10 RR023680NIGMS NIH HHS P01 GM088297NIGMS NIH HHS R01 GM055641NIGMS NIH HHS R01 GM065319
6 · The paper itself

Abstract

The highly conserved Kinase, Endopeptidase and Other Proteins of small Size (KEOPS)/Endopeptidase-like and Kinase associated to transcribed Chromatin (EKC) protein complex has been implicated in transcription, telomere maintenance and chromosome segregation, but its exact function remains unknown. The complex consists of five proteins, Kinase-Associated Endopeptidase (Kae1), a highly conserved protein present in bacteria, archaea and eukaryotes, a kinase (Bud32) and three additional small polypeptides. We showed that the complex is required for a universal tRNA modification, threonyl carbamoyl adenosine (t6A), found in all tRNAs that pair with ANN codons in mRNA. We also showed that the bacterial ortholog of Kae1, YgjD, is required for t6A modification of Escherichia coli tRNAs. The ATPase activity of Kae1 and the kinase activity of Bud32 are required for the modification. The yeast protein Sua5 has been reported previously to be required for t6A synthesis. Using yeast extracts, we established an in vitro system for the synthesis of t6A that requires Sua5, Kae1, threonine, bicarbonate and ATP. It remains to be determined whether all reported defects of KEOPS/EKC mutants can be attributed to the lack of t6A, or whether the complex has multiple functions.

Indexed as

AdenosineAmino Acid SequenceBase SequenceMetalloendopeptidasesMolecular Sequence DataMultiprotein ComplexesNucleic Acid ConformationProtein BiosynthesisProtein Serine-Threonine KinasesRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAdenosineBUD32 protein, S cerevisiaeKae1 protein, S cerevisiaeKEOPS complex, S cerevisiaeMetalloendopeptidasesMultiprotein ComplexesN(6)-(N-threonylcarbonyl)adenosineProtein Serine-Threonine KinasesRNA, TransferSaccharomyces cerevisiae Proteins

Identifiers

PMID21183954
PMCPMC3049205
OpenAlexW1826442349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.