Evidence map›Paper›PMID 21183684›Full record

ArticleThe Journal of biological chemistry2011

Single molecule studies of physiologically relevant telomeric tails reveal POT1 mechanism for promoting G-quadruplex unfolding.

Hong Wang, Gerald J Nora, Harshad Ghodke, Patricia L Opresko

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 102 citations in OpenAlex.

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  9. Dynamic folding and accessibility of telomeric overhang.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Article
  12. Emerging accessibility patterns in long telomeric overhangs.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Hong WangDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, USA. wangh4@upmc.edu
Gerald J Nora
Harshad Ghodke
Patricia L Opresko
Carnegie Mellon University · USUniversity of Pittsburgh · USUPMC Hillman Cancer Center · US

Funding

Mechanisms of Telomeric DNA Loss and RepairR01ES015052 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI OPRESKO, PATRICIA L · 2006 to 2010
$2.4M
DNA damage induced structural and dynamic changes at telomeresR00ES016758 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI WANG, HONG · 2012 to 2014
$733k
DNA damage induced structural and dynamic changes at telomeresK99ES016758 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WANG, HONG · 2009 to 2010
$165k
Processing of Alternative Structures in Telomeric DNAF30AG032861 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NORA, GERALD JOSEPH · 2009 to 2011
$93k
NIA NIH HHS F30 AG032861NIA NIH HHS F30AG032861NIEHS NIH HHS 1K99ES016758-01NIEHS NIH HHS ES0515052NIEHS NIH HHS K99 ES016758NIEHS NIH HHS R00 ES016758NIEHS NIH HHS R01 ES015052
6 · The paper itself

Abstract

Human telomeres are composed of duplex TTAGGG repeats and a 3' single-stranded DNA tail. The telomeric DNA is protected and regulated by the shelterin proteins, including the protection of telomeres 1 (POT1) protein that binds telomeric single-stranded DNA. The single-stranded tail can fold into G-quadruplex (G4) DNA. Both POT1 and G4 DNA play important roles in regulating telomere length homeostasis. To date, most studies have focused on individual quadruplexes formed by four TTAGGG repeats. Telomeric tails in human cells have on average six times as many repeats, and no structural studies have examined POT1 binding in competition with G4 DNA folding. Using single molecule atomic force microscopy imaging, we observed that the majority of the telomeric tails of 16 repeats formed two quadruplexes even though four were possible. The result that physiological telomeric tails rarely form the maximum potential number of G4 units provides a structural basis for the coexistence of G4 and POT1 on the same DNA molecule, which is observed directly in the captured atomic force microscopy images. We further observed that POT1 is significantly more effective in disrupting quadruplex DNA on long telomeric tails than an antisense oligonucleotide, indicating a novel POT1 activity beyond simply preventing quadruplex folding.

Indexed as

G-QuadruplexesAnimalsCell LineCombinatorial Chemistry TechniquesDNA, Single-StrandedHumansInsectaMicroscopy, Atomic ForceModels, ChemicalOligonucleotides, AntisenseProtein BindingShelterin ComplexTelomereTelomere-Binding ProteinsDNA, Single-StrandedOligonucleotides, AntisensePOT1 protein, humanShelterin ComplexTelomere-Binding Proteins

Identifiers

PMID21183684
PMCPMC3045003
OpenAlexW2010203380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.