Evidence map›Paper›PMID 21183664›Full record

ArticleJournal of bacteriology2011

Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.

Jong-In Han, Hong-Kyu Choi, Seung-Won Lee, Paul M Orwin, Jina Kim, Sarah L Laroe, Tae-Gyu Kim, Jennifer O'Neil, Jared R Leadbetter, Sang Yup Lee and 5 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Review
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  6. Completed genomes fromCurrent research in microbial sciences · 2025
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  11. Effects of osthole andFrontiers in microbiology · 2024
    Article
  12. Article
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  15. Article
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  19. Article
  20. Journal of microbiology and biotechnology · 2022
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jong-In HanDepartment of Civil and Environmental Engineering, KAIST, Republic of Korea. jihan@kaist.ac.kr
Hong-Kyu Choi
Seung-Won Lee
Paul M Orwin
Jina Kim
Sarah L Laroe
Tae-Gyu Kim
Jennifer O'Neil
Jared R Leadbetter
Sang Yup Lee
Cheol-Goo Hur
Jim C Spain
Galina Ovchinnikova
Lynne Goodwin
Cliff Han

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variovorax paradoxus is a microorganism of special interest due to its diverse metabolic capabilities, including the biodegradation of both biogenic compounds and anthropogenic contaminants. V. paradoxus also engages in mutually beneficial interactions with both bacteria and plants. The complete genome sequence of V. paradoxus S110 is composed of 6,754,997 bp with 6,279 predicted protein-coding sequences within two circular chromosomes. Genomic analysis has revealed multiple metabolic features for autotrophic and heterotrophic lifestyles. These metabolic diversities enable independent survival, as well as a symbiotic lifestyle. Consequently, S110 appears to have evolved into a superbly adaptable microorganism that is able to survive in ever-changing environmental conditions. Based on our findings, we suggest V. paradoxus S110 as a potential candidate for agrobiotechnological applications, such as biofertilizer and biopesticide. Because it has many associations with other biota, it is also suited to serve as an additional model system for studies of microbe-plant and microbe-microbe interactions.

Indexed as

Genome, BacterialChromosomes, BacterialMetalsMolecular Sequence DataPlantsProteobacteriaSymbiosisMetals

Identifiers

PMID21183664
PMCPMC3067606

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.