Evidence map›Paper›PMID 21182782›Full record

ArticleBMC microbiology2010

Eukaryotic signaling pathways targeted by Salmonella effector protein AvrA in intestinal infection in vivo.

Xingyin Liu, Rong Lu, Yinglin Xia, Shaoping Wu, Jun Sun

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 53 citations in OpenAlex.

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  3. A Systemic Review on Fitness and Survival ofIndian journal of microbiology · 2024
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  5. Impact of Quercetin againstFoods (Basel, Switzerland) · 2022
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  6. Heightened Virulence ofInfection and immunity · 2021
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  8. Analysis ofInfection and drug resistance · 2020
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  10. Diseases (Basel, Switzerland) · 2019
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  11. The Four Horsemen in Colon Cancer.Journal of oncology · 2019
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  12. Article
  13. Presence ofOncotarget · 2017
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  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Metabolic host responses to infection by intracellular bacterial pathogens.Frontiers in cellular and infection microbiology · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xingyin LiuDepartment of Medicine, Gastroenterology & Hepatology Division, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14642, USA.
Rong Lu
Yinglin Xia
Shaoping Wu
Jun Sun
University of Rochester · US

Funding

NF-kB /Beta-catenin interaction during intestinal inflammationK01DK075386 · NIDDK · UNIVERSITY OF ROCHESTER · PI SUN, JUN · 2007 to 2011
$651k
Enteric bacterial modulation of Vitamin D Receptor signaling in colitisR03DK089010 · NIDDK · UNIVERSITY OF ROCHESTER · PI SUN, JUN · 2010 to 2011
$154k
NIDDK NIH HHS K01 DK075386NIDDK NIH HHS KO1 DK075386NIDDK NIH HHS R03 DK089010
6 · The paper itself

Abstract

backgroundThe Salmonella AvrA gene is present in 80% of Salmonella enterica serovar strains. AvrA protein mimics the activities of some eukaryotic proteins and uses these activities to the pathogen's advantage by debilitating the target cells, such as intestinal epithelial cells. Therefore, it is important to understand how AvrA works in targeting eukaryotic signaling pathways in intestinal infection in vivo. In this study, we hypothesized that AvrA interacts with multiple stress pathways in eukaryotic cells to manipulate the host defense system. A whole genome approach combined with bioinformatics assays was used to investigate the in vivo genetic responses of the mouse colon to Salmonella with or without AvrA protein expression in the early stage (8 hours) and late stage (4 days). Specifically, we examined the gene expression profiles in mouse colon as it responded to pathogenic Salmonella stain SL1344 (with AvrA expression) or SB1117 (without AvrA expression).

resultsWe identified the eukaryotic targets of AvrA and the cell signaling pathways regulated by AvrA in vivo. We found that pathways, such as mTOR, NF-kappaB, platelet-derived growth factors, vascular endothelial growth factor, oxidative phosphorylation, and mitogen-activated protein kinase signaling are specifically regulated by AvrA in vivo and are associated with inflammation, anti-apoptosis, and proliferation. At the early stage of Salmonella infection, AvrA mainly targeted pathways related to nuclear receptor signaling and oxidative phosphorylation. At the late stage of Salmonella infection, AvrA is associated with interferon-gamma responses.

conclusionBoth early and late phases of the host response exhibit remarkable specificity for the AvrA+ Salmonella. Our studies provide new insights into the eukaryotic molecular cascade that combats Salmonella-associated intestinal infection in vivo.

Indexed as

Gene Expression ProfilingAnimalsBacterial ProteinsColonFemaleMiceMice, Inbred C57BLSalmonella InfectionsSalmonella typhimuriumSignal TransductionAvrA protein, Salmonella entericaBacterial Proteins

Identifiers

PMID21182782
PMCPMC3027599
OpenAlexW2087177008

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.