Evidence map›Paper›PMID 21181423›Full record

ArticleMarine biotechnology (New York, N.Y.)2011

Occurrence of a silicatein gene in glass sponges (Hexactinellida: Porifera).

Galina N Veremeichik, Yuri N Shkryl, Victor P Bulgakov, Sergey V Shedko, Valery B Kozhemyako, Svetlana N Kovalchuk, Vladimir B Krasokhin, Yuri N Zhuravlev, Yuri N Kulchin

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Article in Marine biotechnology (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Galina N VeremeichikInstitute of Biology and Soil Science, Far East Branch of Russian Academy of Sciences, Vladivostok, Russia.
Yuri N Shkryl
Victor P Bulgakov
Sergey V Shedko
Valery B Kozhemyako
Svetlana N Kovalchuk
Vladimir B Krasokhin
Yuri N Zhuravlev
Yuri N Kulchin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Silicatein genes are involved in spicule formation in demosponges (Demospongiae: Porifera). However, numerous attempts to isolate silicatein genes from glass sponges (Hexactinellida: Porifera) resulted in a limited success. In the present investigation, we performed analysis of potential silicatein/cathepsin transcripts in three different species of glass sponges (Pheronema raphanus, Aulosaccus schulzei, and Bathydorus levis). In total, 472 clones of such transcripts have been analyzed. Most of them represent cathepsin transcripts and only three clones have been found to represent transcripts, which can be related to silicateins. Silicatein transcripts were identified in A. schulzei (Hexactinellida; Lyssacinosida; Rosselidae), and the corresponding gene was called AuSil-Hexa. Expression of AuSil-Hexa in A. schulzei was confirmed by real-time PCR. Comparative sequence analysis indicates high sequence identity of the A. schulzei silicatein with demosponge silicateins described previously. A phylogenetic analysis indicates that the AuSil-Hexa protein belongs to silicateins. However, the AuSil-Hexa protein contains a catalytic cysteine instead of the conventional serine.

Indexed as

PhylogenyProtein ConformationAmino Acid SequenceAnimalsBase SequenceBayes TheoremCathepsinsChinaCloning, MolecularComputational BiologyDNA, ComplementaryDNA PrimersGene Expression ProfilingModels, GeneticMolecular Sequence DataOceans and SeasCathepsinsDNA, ComplementaryDNA Primerssilicatein alpha

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.