Evidence map›Paper›PMID 21179425›Full record

ArticlePloS one2010

Diversity of beetle genes encoding novel plant cell wall degrading enzymes.

Yannick Pauchet, Paul Wilkinson, Ritika Chauhan, Richard H Ffrench-Constant

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 153 citations in OpenAlex.

  1. Article
  2. Effects of Si and N Addition onPlants (Basel, Switzerland) · 2026
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  7. Metabolic novelty originating from horizontal gene transfer is essential for leaf beetle survival.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  9. The Genome ofGenes · 2022
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  11. Article
  12. Symbiont Genomic Features and Localization in the Bean BeetleApplied and environmental microbiology · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Yannick PauchetBiosciences, University of Exeter, Penryn, United Kingdom. ypauchet@ice.mpg.de
Paul Wilkinson
Ritika Chauhan
Richard H Ffrench-Constant
University of Exeter · GBMax Planck Institute for Chemical Ecology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cell walls are a heterogeneous mixture of polysaccharides and proteins that require a range of different enzymes to degrade them. Plant cell walls are also the primary source of cellulose, the most abundant and useful biopolymer on the planet. Plant cell wall degrading enzymes (PCWDEs) are therefore important in a wide range of biotechnological processes from the production of biofuels and food to waste processing. However, despite the fact that the last common ancestor of all deuterostomes was inferred to be able to digest, or even synthesize, cellulose using endogenous genes, all model insects whose complete genomes have been sequenced lack genes encoding such enzymes. To establish if the apparent "disappearance" of PCWDEs from insects is simply a sampling problem, we used 454 mediated pyrosequencing to scan the gut transcriptomes of beetles that feed on a variety of plant derived diets. By sequencing the transcriptome of five beetles, and surveying publicly available ESTs, we describe 167 new beetle PCWDEs belonging to eight different enzyme families. This survey proves that these enzymes are not only present in non-model insects but that the multigene families that encode them are apparently undergoing complex birth-death dynamics. This reinforces the observation that insects themselves, and not just their microbial symbionts, are a rich source of PCWDEs. Further it emphasises that the apparent absence of genes encoding PCWDEs from model organisms is indeed simply a sampling artefact. Given the huge diversity of beetles alive today, and the diversity of their lifestyles and diets, we predict that beetle guts will emerge as an important new source of enzymes for use in biotechnology.

Indexed as

Amino Acid SequenceAnimalsBayes TheoremBiotechnologyCatalytic DomainCell WallColeopteraExpressed Sequence TagsGene Expression ProfilingModels, GeneticMolecular Sequence DataPlant Physiological PhenomenaPlantsSequence Analysis, DNASequence Homology, Amino Acid

Identifiers

PMID21179425
PMCPMC3003705
OpenAlexW2095632226

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.