Evidence map›Paper›PMID 21179116›Full record

ArticleGenes and immunity2011

An autoimmune-associated variant in PTPN2 reveals an impairment of IL-2R signaling in CD4(+) T cells.

S A Long, K Cerosaletti, J Y Wan, J-C Ho, M Tatum, S Wei, H G Shilling, J H Buckner

Abstract read
In one paragraph

Article in Genes and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 1 synthesis or guideline pooled it, 146 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Protein phosphatases in systemic autoimmunity.Immunometabolism (Cobham, Surrey) · 2025
    Review
  10. Impact of genotyping (Frontiers in endocrinology · 2025
    Article
  11. Review
  12. Article
  13. Review
  14. Article
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  16. Article
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  18. Article
  19. Article
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

S A LongDepartment of Translational Immunology, Benaroya Research Institute at Virginia Mason, Seattle, WA 98101, USA. along@benaroyaresearch.org
K Cerosaletti
J Y Wan
J-C Ho
M Tatum
S Wei
H G Shilling
J H Buckner
Virginia Mason Medical Center · USBenaroya Research InstituteSeattle University · USUniversity of Washington · US

Funding

Activation Induced Generation of Human Regulatory T CellsR01DK072457 · NIDDK · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI BUCKNER, JANE HOYT · 2005 to 2010
$1.6M
Linking Genetic Variation in the PTPN2 Gene to Autoimmune Disease SusceptibilityR03DA027013 · NIDA · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI BUCKNER, JANE HOYT · 2009 to 2010
$364k
NIDA NIH HHS R03 DA027013NIDDK NIH HHS R01 DK072457
6 · The paper itself

Abstract

The IL-2/IL-2R signaling pathway has an important role in autoimmunity. Several genes identified in genome-wide association (GWA) studies encode proteins in the IL-2/IL-2R signaling cascade that are associated with autoimmune diseases. One of these, PTPN2, encodes a protein tyrosine phosphatase that is highly expressed in T cells and regulates cytokine signaling. An intronic risk allele in PTPN2, rs1893217(C), correlated with decreased IL-2R signaling in CD4(+) T cells as measured by phosphorylation of STAT5 (phosphorylated STAT5 (pSTAT5)). We modeled an additive single nucleotide polymorphism (SNP) genotype, in which each copy of the risk allele conferred a decrease in IL-2R signaling (P=4.4 × 10(-8)). Decreased pSTAT5 impacted IL-2Rβ chain signaling resulting in reduced FOXP3 expression in activated cells. This phenotype was not due to overt differences in expression of the IL-2R, molecules in the IL-2R signaling cascade or defects in STAT5. However, the rs1893217(C) risk variant did correlate with decreased PTPN2 expression in CD4(+)CD45RO T cells (P=0.0002). Thus, the PTPN2rs1893217(C) risk allele associated with reduced pSTAT5 in response to IL-2 and reduced PTPN2 expression. Together, these data suggest that decreased expression of PTPN2 may indirectly modulate IL-2 responsiveness. These findings, identified through genotype/phenotype relationships, may lead to identification of novel mechanisms underlying dysregulation of cytokine signaling in autoimmunity.

Indexed as

AdultAllelesAutoimmunityCD4-Positive T-LymphocytesFemaleForkhead Transcription FactorsGenome-Wide Association StudyGenotypeHumansInterleukin-2MalePhenotypePhosphorylationPolymorphism, Single NucleotideProtein Tyrosine Phosphatase, Non-Receptor Type 2Receptors, Interleukin-2Forkhead Transcription FactorsFOXP3 protein, humanInterleukin-2Protein Tyrosine Phosphatase, Non-Receptor Type 2Receptors, Interleukin-2STAT5 Transcription Factor

Identifiers

PMID21179116
PMCPMC3058680
OpenAlexW2066212718

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.