ArticleNucleic acids research2011
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.
Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
26 citing papers in PubMed.
- Facilities that make the PDB data collection more powerful.Protein science : a publication of the Protein Society · 2020Article
- The NCATS BioPlanet - An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics.Frontiers in pharmacology · 2019Article
- High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.Database : the journal of biological databases and curation · 2016Article
- A Survey of Bioinformatics Database and Software Usage through Mining the Literature.PloS one · 2016Article
- Ambiguity and variability of database and software names in bioinformatics.Journal of biomedical semantics · 2015Article
- Toward an integrated software platform for systems pharmacology.Biopharmaceutics & drug disposition · 2013Review
- bioNerDS: exploring bioinformatics' database and software use through literature mining.BMC bioinformatics · 2013Article
- JOINT AND INDIVIDUAL VARIATION EXPLAINED (JIVE) FOR INTEGRATED ANALYSIS OF MULTIPLE DATA TYPES.The annals of applied statistics · 2013Article
- Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal.BMC genomics · 2013Article
- GoSynthetic database tool to analyse natural and engineered molecular processes.Database : the journal of biological databases and curation · 2013Article
- A query integrator and manager for the query web.Journal of biomedical informatics · 2012Article
- Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities.Hearing research · 2012Review
- Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV.Briefings in bioinformatics · 2012Article
- IntegromeDB: an integrated system and biological search engine.BMC genomics · 2012Article
- Text mining for the biocuration workflow.Database : the journal of biological databases and curation · 2012Article
- MetaBase--the wiki-database of biological databases.Nucleic acids research · 2012Article
- Biocurators and biocuration: surveying the 21st century challenges.Database : the journal of biological databases and curation · 2012Article
- How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.Database : the journal of biological databases and curation · 2012Article
- Why open drug discovery needs four simple rules for licensing data and models.PLoS computational biology · 2012Article
- Teaching the fundamentals of biological data integration using classroom games.PLoS computational biology · 2012Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
The current 18th Database Issue of Nucleic Acids Research features descriptions of 96 new and 83 updated online databases covering various areas of molecular biology. It includes two editorials, one that discusses COMBREX, a new exciting project aimed at figuring out the functions of the 'conserved hypothetical' proteins, and one concerning BioDBcore, a proposed description of the 'minimal information about a biological database'. Papers from the members of the International Nucleotide Sequence Database collaboration (INSDC) describe each of the participating databases, DDBJ, ENA and GenBank, principles of data exchange within the collaboration, and the recently established Sequence Read Archive. A testament to the longevity of databases, this issue includes updates on the RNA modification database, Definition of Secondary Structure of Proteins (DSSP) and Homology-derived Secondary Structure of Proteins (HSSP) databases, which have not been featured here in >12 years. There is also a block of papers describing recent progress in protein structure databases, such as Protein DataBank (PDB), PDB in Europe (PDBe), CATH, SUPERFAMILY and others, as well as databases on protein structure modeling, protein-protein interactions and the organization of inter-protein contact sites. Other highlights include updates of the popular gene expression databases, GEO and ArrayExpress, several cancer gene databases and a detailed description of the UK PubMed Central project. The Nucleic Acids Research online Database Collection, available at: http://www.oxfordjournals.org/nar/database/a/, now lists 1330 carefully selected molecular biology databases. The full content of the Database Issue is freely available online at the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.