Evidence map›Paper›PMID 21173167›Full record

ArticleMolecular and cellular biology2011

Evolutionarily conserved, growth plate zone-specific regulation of the matrilin-1 promoter: L-Sox5/Sox6 and Nfi factors bound near TATA finely tune activation by Sox9.

Andrea Nagy, Erzsébet Kénesi, Otgonchimeg Rentsendorj, Annamária Molnár, Tibor Szénási, Ildikó Sinkó, Agnes Zvara, Sajit Thottathil Oommen, Endre Barta, László G Puskás and 2 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Andrea NagyInstitute of Biochemistry, Biological Research Center of the Hungarian Academy of Sciences, Szeged, Hungary.
Erzsébet Kénesi
Otgonchimeg Rentsendorj
Annamária Molnár
Tibor Szénási
Ildikó Sinkó
Agnes Zvara
Sajit Thottathil Oommen
Endre Barta
László G Puskás
Veronique Lefebvre
Ibolya Kiss
HUN-REN Szegedi Biológiai Kutatóközpont · HUHungarian Academy of Sciences · HUInstitute of Biochemistry · HUCleveland Clinic Lerner College of Medicine · USInstitute of Genetics · HUUniversity of Debrecen · HU

Funding

Transcriptional Control of Sox9R01AR060016 · NIAMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LEFEBVRE, VERONIQUE M · 2010 to 2014
$2.2M
NIAMS NIH HHS AR60016NIAMS NIH HHS R01 AR060016
6 · The paper itself

Abstract

To help uncover the mechanisms underlying the staggered expression of cartilage-specific genes in the growth plate, we dissected the transcriptional mechanisms driving expression of the matrilin-1 gene (Matn1). We show that a unique assembly of evolutionarily conserved cis-acting elements in the Matn1 proximal promoter restricts expression to the proliferative and prehypertrophic zones of the growth plate. These elements functionally interact with distal elements and likewise are capable of restricting the domain of activity of a pancartilaginous Col2a1 enhancer. The proximal elements include a Pe1 element binding the chondrogenic L-Sox5, Sox6, and Sox9 proteins, a SI element binding Nfi proteins, and an initiator Ine element binding the Sox trio and other factors. Sox9 binding to Pe1 is indispensable for functional interaction with the distal promoter. Binding of L-Sox5/Sox6 to Ine and Nfib to SI modulates Sox9 transactivation in a protein dose-dependent manner, possibly to enhance Sox9 activity in early stages of chondrogenesis and repress it at later stages. Hence, our data suggest a novel model whereby Sox and Nfi proteins bind to conserved Matn1 proximal elements and functionally interact with each other to finely tune gene expression in specific zones of the cartilage growth plate.

Indexed as

Promoter Regions, GeneticAnimalsAnimals, Genetically ModifiedBase SequenceBinding SitesCells, CulturedChick EmbryoChlorocebus aethiopsChondrocytesChondrogenesisConserved SequenceCOS CellsDNAEnhancer Elements, GeneticEvolution, MolecularExtracellular Matrix ProteinsDNAExtracellular Matrix ProteinsGlycoproteinsMatrilin ProteinsNFI Transcription FactorsRNA, MessengerSOX9 Transcription FactorSOXD Transcription Factors

Identifiers

PMID21173167
PMCPMC3028657
OpenAlexW2137188884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.