Evidence map›Paper›PMID 21173144›Full record

ArticleThe Journal of biological chemistry2011

Membrane topology of NAADP-sensitive two-pore channels and their regulation by N-linked glycosylation.

Robert Hooper, Dev Churamani, Eugen Brailoiu, Colin W Taylor, Sandip Patel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Plasticity of the selectivity filter is essential for permeation in lysosomal TPC2 channels.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. TPC Functions in the Immune System.Handbook of experimental pharmacology · 2023
    Article
  5. Endo-Lysosomal Two-Pore Channels and Their Protein Partners.Handbook of experimental pharmacology · 2023
    Review
  6. Review
  7. Article
  8. Endolysosomal CaCancers · 2018
    Review
  9. Two-pore channels and disease.Biochimica et biophysica acta. Molecular cell research · 2018
    Review
  10. Article
  11. Article
  12. NAADP-evoked CaCell calcium · 2017
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Two-Pore Channels: Lessons from Mutant Mouse Models.Messenger (Los Angeles, Calif. : Print) · 2015
    Article
  19. Review
  20. Poring over two-pore channel pore mutants.Messenger (Los Angeles, Calif. : Print) · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Robert HooperDepartment of Cell and Developmental Biology, University College London, London WC1E 6BT, United Kingdom.
Dev Churamani
Eugen Brailoiu
Colin W Taylor
Sandip Patel
University College London · GBTemple University · USUniversity of Cambridge · GB

Funding

Role of nonnuclear estrogen receptor GPR30 in preganglionic vagal neuronsR01HL090804 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI BRAILOIU, EUGEN · 2009 to 2012
$1.5M
Biotechnology and Biological Sciences Research Council BB/G013721/1Biotechnology and Biological Sciences Research Council BB/H009736/1NHLBI NIH HHS HL90804NHLBI NIH HHS R01 HL090804Wellcome TrustWellcome Trust 085295
6 · The paper itself

Abstract

Two-pore channels (TPCs) localize to the endolysosomal system and have recently emerged as targets for the Ca(2+)-mobilizing messenger, nicotinic acid adenine dinucleotide phosphate (NAADP). However, their membrane topology is unknown. Using fluorescence protease protection assays, we show that human TPC1 and TPC2 possess cytosolic N and C termini and therefore an even number of transmembrane regions. Fluorophores placed at position 225 or 347 in TPC1, or 339 in TPC2 were also cytosolic, whereas a fluorophore at position 628 in TPC1 was luminal. These data together with sequence similarity to voltage-gated Ca(2+) and Na(+) channels, and unbiased in silico predictions are consistent with a topology in which two homologous domains are present, each comprising 6 transmembrane regions and a re-entrant pore loop. Immunocytochemical analysis of selectively permeabilized cells using antipeptide antibodies confirmed that the C-terminal tails of recombinant TPCs are cytosolic and that residues 240-254 of TPC2 prior to putative pore 1 are luminal. Both TPC1 and TPC2 are N-glycosylated with residues 599, 611, and 616 contributing to glycosylation of TPC1. This confirms the luminal position of these residues, which immediately precede the putative pore loop of the second domain. Mutation of all three glycosylation sites in TPC1 enhances NAADP-evoked cytosolic Ca(2+) signals. Our data establish essential features of the topology of two-pore channels.

Indexed as

Calcium SignalingCell Line, TumorFemaleGlycosylationHEK293 CellsHumansIon Channel GatingMutationNADPProtein Modification, TranslationalProtein Structure, SecondaryProtein Structure, TertiaryTRPC Cation ChannelsNAADPNADPtransient receptor potential cation channel, subfamily C, member 1TRPC2 protein, humanTRPC Cation Channels

Identifiers

PMID21173144
PMCPMC3059026
OpenAlexW2046253303

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.