Evidence map›Paper›PMID 21170609›Full record

ArticleMolecular biotechnology2011

A new method for repeated "self-cloning" promoter replacement in Saccharomyces cerevisiae.

Olga A Sofyanovich, Hiroaki Nishiuchi, Kazuo Yamagishi, Kenjiro Maekawa, Vsevolod A Serebryanyy

Abstract read
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In one paragraph

Article in Molecular biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Olga A SofyanovichAjinomoto-Genetika Research Institute, 1st Dorozhny Proezd 1-1, Moscow, Russia 117545.
Hiroaki Nishiuchi
Kazuo Yamagishi
Kenjiro Maekawa
Vsevolod A Serebryanyy
Ajinomoto (United States) · USSuzuki (Japan) · JPAjinomoto (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A method for repeated PCR-mediated promoter replacement in the yeast Saccharomyces cerevisiae is described. It was proposed to use the DNA fragment comprising the marker gene that enables both positive and negative selection (a selectable/counter-selectable marker) surrounded by direct repeats of the desired promoter as a promoter replacement cassette. This fragment is integrated upstream of the target gene because of PCR-added terminal sequences for homologous recombination with the target locus. Subsequent marker excision via homologous recombination between the copies of the two promoters leaves one copy of the desired promoter upstream of the target genes, without any heterologous scar sequence. To test this method, a set of plasmids bearing the S. cerevisiae URA3 gene surrounded by two copies of the ADH1 or PGK1 promoter was constructed. Using these cassettes, the native promoters of the GSH1 and GSH2 genes were replaced in the ura3Δ0 recipient strains. The proposed method is useful for research applications due to simple marker excision, and for construction of "self-cloning" industrial strains, because no heterologous DNA is retained in the genome of the resulting strain after marker excision.

Indexed as

Base SequenceCloning, MolecularGene Expression Regulation, FungalGenetic MarkersModels, GeneticMolecular Sequence DataPlasmidsPolymerase Chain ReactionPromoter Regions, GeneticRecombination, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGenetic MarkersSaccharomyces cerevisiae ProteinsURA3 protein, S cerevisiae

Identifiers

PMID21170609
OpenAlexW1999166284

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.