Evidence map›Paper›PMID 21170273›Full record

ArticlePloS one2010

Genome-wide screen for Mycobacterium tuberculosis genes that regulate host immunity.

Aimee M Beaulieu, Poonam Rath, Marianne Imhof, Mark E Siddall, Julia Roberts, Dirk Schnappinger, Carl F Nathan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. TheInternational journal of molecular sciences · 2022
    Review
  6. Extracellular Vesicles in Mycobacteria and Tuberculosis.Frontiers in cellular and infection microbiology · 2022
    Review
  7. Frontiers in immunology · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aimee M BeaulieuDepartment of Microbiology and Immunology, Weill Cornell Medical College, New York, New York, United States of America.
Poonam Rath
Marianne Imhof
Mark E Siddall
Julia Roberts
Dirk Schnappinger
Carl F Nathan
Cornell University · USAmerican Museum of Natural History · US

Funding

IMMUNOLOGY RESEARCH TRAINING PROGRAMT32AI007621 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI CESARMAN, ETHEL · 1999 to 2014
$3.4M
NIAID NIH HHS T32 AI007621NIAID NIH HHS T32 AI07621
6 · The paper itself

Abstract

In spite of its highly immunogenic properties, Mycobacterium tuberculosis (Mtb) establishes persistent infection in otherwise healthy individuals, making it one of the most widespread and deadly human pathogens. Mtb's prolonged survival may reflect production of microbial factors that prevent even more vigorous immunity (quantitative effect) or that divert the immune response to a non-sterilizing mode (qualitative effect). Disruption of Mtb genes has produced a list of several dozen candidate immunomodulatory factors. Here we used robotic fluorescence microscopy to screen 10,100 loss-of-function transposon mutants of Mtb for their impact on the expression of promoter-reporter constructs for 12 host immune response genes in a mouse macrophage cell line. The screen identified 364 candidate immunoregulatory genes. To illustrate the utility of the candidate list, we confirmed the impact of 35 Mtb mutant strains on expression of endogenous immune response genes in primary macrophages. Detailed analysis focused on a strain of Mtb in which a transposon disrupts Rv0431, a gene encoding a conserved protein of unknown function. This mutant elicited much more macrophage TNFα, IL-12p40 and IL-6 in vitro than wild type Mtb, and was attenuated in the mouse. The mutant list provides a platform for exploring the immunobiology of tuberculosis, for example, by combining immunoregulatory mutations in a candidate vaccine strain.

Indexed as

Gene Expression Regulation, BacterialGenome, BacterialAnimalsDNA Transposable ElementsFemaleGenes, BacterialInterleukin-12 Subunit p40Interleukin-6MacrophagesMiceMice, Inbred C57BLMicroscopy, FluorescenceMutationMycobacterium tuberculosisTumor Necrosis Factor-alphaDNA Transposable ElementsInterleukin-12 Subunit p40Interleukin-6Tumor Necrosis Factor-alpha

Identifiers

PMID21170273
PMCPMC3000826
OpenAlexW2145179825

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.