Evidence map›Paper›PMID 21170032›Full record

ArticleNature cell biology2011

Loss of the RhoGAP SRGP-1 promotes the clearance of dead and injured cells in Caenorhabditis elegans.

Lukas J Neukomm, Andreas P Frei, Juan Cabello, Jason M Kinchen, Ronen Zaidel-Bar, Zhong Ma, Lisa B Haney, Jeff Hardin, Kodi S Ravichandran, Sergio Moreno and 1 more

Erratum issuedAbstract read
In one paragraph

Article in Nature cell biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Single-molecule force spectroscopy reveals intra- and intermolecular interactions ofProceedings of the National Academy of Sciences of the United States of America · 2024
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  14. Review
  15. Control of developmental networks by Rac/Rho small GTPases: How cytoskeletal changes during embryogenesis are orchestrated.BioEssays : news and reviews in molecular, cellular and developmental biology · 2016
    Review
  16. Article
  17. Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

11 authors.

Lukas J NeukommInstitute of Molecular Life Sciences, University of Zurich, 8057 Zurich, Switzerland.
Andreas P Frei
Juan Cabello
Jason M Kinchen
Ronen Zaidel-Bar
Zhong Ma
Lisa B Haney
Jeff Hardin
Kodi S Ravichandran
Sergio Moreno
Michael O Hengartner

Funding

Tension-dependent regulation of alpha-catenin during morphogenesis in C. elegansR01GM058038 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HARDIN, JEFFREY D · 1998 to 2021
$6.2M
Global Biothreats Training ProgramT32AI055432 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI CRISS, ALISON K, PETRI, WILLIAM A · 2003 to 2022
$4.0M
Role of ELMO and DOCK 180 in signaling to engulfmentR01GM064709 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI LORENZ, ULRIKE, RAVICHANDRAN, KODI S · 2003 to 2016
$3.6M
Regulation of epithelial morphogenesis by forminsF32GM078747 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ZAIDEL-BAR, RONEN · 2006 to 2008
$139k
NIAID NIH HHS T32 AI055432NIGMS NIH HHS F32 GM078747NIGMS NIH HHS GM078747NIGMS NIH HHS R01 GM058038NIGMS NIH HHS R01 GM064709
6 · The paper itself

Abstract

Multicellular animals rapidly clear dying cells from their bodies. Many of the pathways that mediate this cell removal are conserved through evolution. Here, we identify srgp-1 as a negative regulator of cell clearance in both Caenorhabditis elegans and mammalian cells. Loss of srgp-1 function results in improved engulfment of apoptotic cells, whereas srgp-1 overexpression inhibits apoptotic cell corpse removal. We show that SRGP-1 functions in engulfing cells and functions as a GTPase activating protein (GAP) for CED-10 (Rac1). Interestingly, loss of srgp-1 function promotes not only the clearance of already dead cells, but also the removal of cells that have been brought to the verge of death through sublethal apoptotic, necrotic or cytotoxic insults. In contrast, impaired engulfment allows damaged cells to escape clearance, which results in increased long-term survival. We propose that C. elegans uses the engulfment machinery as part of a primitive, but evolutionarily conserved, survey mechanism that identifies and removes unfit cells within a tissue.

Indexed as

ApoptosisAmino Acid SequenceAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsCell LineGreen Fluorescent ProteinsGTPase-Activating ProteinsMiceMicroscopy, FluorescenceMolecular Sequence DataMutationNIH 3T3 CellsPhagocytosisProtein BindingCaenorhabditis elegans ProteinsCED-10 protein, C elegansGreen Fluorescent ProteinsGTPase-Activating Proteinsrac GTP-Binding Proteinsrho GTPase-activating proteinSRGP-1 protein, C elegans

Identifiers

PMID21170032
PMCPMC3808961

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.