Evidence map›Paper›PMID 21169734›Full record

ArticleAutophagy2011

Atg35, a micropexophagy-specific protein that regulates micropexophagic apparatus formation in Pichia pastoris.

Volodymyr Y Nazarko, Taras Y Nazarko, Jean-Claude Farré, Oleh V Stasyk, Dirk Warnecke, Stanislaw Ulaszewski, James M Cregg, Andriy A Sibirny, Suresh Subramani

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Article
  4. Article
  5. Review
  6. Review
  7. Autophagic Induction Greatly EnhancesFrontiers in microbiology · 2018
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Selective autophagy in budding yeast.Cell death and differentiation · 2013
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Pexophagy: the selective degradation of peroxisomes.International journal of cell biology · 2012
    Article
  18. Autophagy dysregulation in amyotrophic lateral sclerosis.Brain pathology (Zurich, Switzerland) · 2012
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 5 countries.

Volodymyr Y NazarkoInstitute of Cell Biology, NAS of Ukraine, Lviv, Ukraine.
Taras Y Nazarko
Jean-Claude Farré
Oleh V Stasyk
Dirk Warnecke
Stanislaw Ulaszewski
James M Cregg
Andriy A Sibirny
Suresh Subramani
Institute of Cell Biology · UAClaremont Colleges · USInstitute of Molecular Biology · BGInstitute of Software Systems · UALa Jolla Alcohol Research · USUniversität Hamburg · DEUniversity of California, San Diego · US

Funding

Mechanisms Involved in PexophagyR01GM069373 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANI, SURESH · 2006 to 2013
$2.3M
NIGMS NIH HHS GM069373NIGMS NIH HHS R01 GM069373
6 · The paper itself

Abstract

Autophagy-related (Atg) pathways deliver cytosol and organelles to the vacuole in double-membrane vesicles called autophagosomes, which are formed at the phagophore assembly site (PAS), where most of the core Atg proteins assemble. Atg28 is a component of the core autophagic machinery partially required for all Atg pathways in Pichia pastoris. This coiled-coil protein interacts with Atg17 and is essential for micropexophagy. However, the role of Atg28 in micropexophagy was unknown. We used the yeast two-hybrid system to search for Atg28 interaction partners from P. pastoris and identified a new Atg protein, named Atg35. The atg35∆ mutant was not affected in macropexophagy, cytoplasm-to-vacuole targeting or general autophagy. However, both Atg28 and Atg35 were required for micropexophagy and for the formation of the micropexophagic apparatus (MIPA). This requirement correlated with a stronger expression of both proteins on methanol and glucose. Atg28 mediated the interaction of Atg35 with Atg17. Trafficking of overexpressed Atg17 from the peripheral ER to the nuclear envelope was required to organize a peri-nuclear structure (PNS), the site of Atg35 colocalization during micropexophagy. In summary, Atg35 is a new Atg protein that relocates to the PNS and specifically regulates MIPA formation during micropexophagy.

Indexed as

AutophagyCarrier ProteinsCytoplasmFungal ProteinsGene Expression Regulation, FungalGene LibraryGlucoseMethanolModels, GeneticMutationPeroxisomesPichiaProtein TransportTime FactorsTwo-Hybrid System TechniquesVacuolesCarrier ProteinsFungal ProteinsGlucoseMethanol

Identifiers

PMID21169734
PMCPMC3127218
OpenAlexW2024927783

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.