ArticleApplied and environmental microbiology2011
Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat.
Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Relationship between Microorganisms Inhabiting Alkaline Siliceous Hot Spring Mat Communities and Overflowing Water.Applied and environmental microbiology · 2020Article
- Biogeography of American Northwest Hot Spring A/BFrontiers in microbiology · 2020Article
- Taisui TS-2007S, a Large Microbial Mat Discovered in Soil in China.Frontiers in microbiology · 2020Article
- Environmental factors shaping the diversity of bacterial communities that promote rice production.BMC microbiology · 2018Article
- Article
- Biodiversity of the microbial mat of the Garga hot spring.BMC evolutionary biology · 2017Article
- Variation of Oxygenation Conditions on a Hydrocarbonoclastic Microbial Community RevealsFrontiers in microbiology · 2017Article
- Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.The ISME journal · 2017Article
- The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing.Frontiers in microbiology · 2016Article
- Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.Photosynthesis research · 2015Review
- The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.Frontiers in microbiology · 2015Article
- Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.Frontiers in microbiology · 2015Article
- The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park.Frontiers in microbiology · 2015Article
- The molecular dimension of microbial species: 2. Synechococcus strains representative of putative ecotypes inhabiting different depths in the Mushroom Spring microbial mat exhibit different adaptive and acclimative responses to light.Frontiers in microbiology · 2015Article
- Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.Frontiers in microbiology · 2015Article
- Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis.Applied and environmental microbiology · 2014Article
- Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea.Molecular ecology · 2014Article
- Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units.Nucleic acids research · 2013Article
- Ecological divergence of a novel group of Chloroflexus strains along a geothermal gradient.Applied and environmental microbiology · 2013Article
- Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.Frontiers in microbiology · 2013Article
Corrections and comments
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4 authors.
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Abstract
Previous research has shown that sequences of 16S rRNA genes and 16S-23S rRNA internal transcribed spacer regions may not have enough genetic resolution to define all ecologically distinct Synechococcus populations (ecotypes) inhabiting alkaline, siliceous hot spring microbial mats. To achieve higher molecular resolution, we studied sequence variation in three protein-encoding loci sampled by PCR from 60°C and 65°C sites in the Mushroom Spring mat (Yellowstone National Park, WY). Sequences were analyzed using the ecotype simulation (ES) and AdaptML algorithms to identify putative ecotypes. Between 4 and 14 times more putative ecotypes were predicted from variation in protein-encoding locus sequences than from variation in 16S rRNA and 16S-23S rRNA internal transcribed spacer sequences. The number of putative ecotypes predicted depended on the number of sequences sampled and the molecular resolution of the locus. Chao estimates of diversity indicated that few rare ecotypes were missed. Many ecotypes hypothesized by sequence analyses were different in their habitat specificities, suggesting different adaptations to temperature or other parameters that vary along the flow channel.
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