Evidence map›Paper›PMID 21167544›Full record

ArticleVirology2011

XPB mediated retroviral cDNA degradation coincides with entry to the nucleus.

Kristine E Yoder, William Roddick, Pia Hoellerbauer, Richard Fishel

Abstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kristine E YoderDepartment of Molecular Virology, Immunology, and Medical Genetics, The Ohio State University Medical Center, Columbus, OH 43210, USA. yoder.176@osu.edu
William Roddick
Pia Hoellerbauer
Richard Fishel
The Ohio State University Wexner Medical Center · US

Funding

The role of DNA repair in retroviral infectionR21AI082422 · NIAID · OHIO STATE UNIVERSITY · PI FISHEL, RICHARD, YODER, KRISTINE E · 2009 to 2010
$375k
NIAID NIH HHS AI82422NIAID NIH HHS R21 AI082422
6 · The paper itself

Abstract

Retroviruses must integrate their cDNA to a host chromosome, but a significant fraction of retroviral cDNA is degraded before integration. XPB and XPD are part of the TFIIH complex which mediates basal transcription and DNA nucleotide excision repair. Retroviral infection increases when XPB or XPD are mutant. Here we show that inhibition of mRNA or protein synthesis does not affect HIV cDNA accumulation suggesting that TFIIH transcription activity is not required for degradation. Other host factors implicated in the stability of cDNA are not components of the XPB and XPD degradation pathway. Although an increase of retroviral cDNA in XPB or XPD mutant cells correlates with an increase of integrated provirus, the integration efficiency of pre-integration complexes is unaffected. Finally, HIV and MMLV cDNA degradation appears to coincide with nuclear import. These results suggest that TFIIH mediated cDNA degradation is a nuclear host defense against retroviral infection.

Indexed as

Virus IntegrationActive Transport, Cell NucleusCells, CulturedDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA, ViralHIVHumansLeukemia Virus, MurineMutant ProteinsMutation, MissenseXeroderma Pigmentosum Group D ProteinDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA, ViralERCC2 protein, humanMutant ProteinsXeroderma Pigmentosum Group D ProteinXPBC-ERCC-3 protein

Identifiers

PMID21167544
PMCPMC3030651
OpenAlexW2051405073

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.