Evidence map›Paper›PMID 21167023›Full record

ArticleMicrobial cell factories2010

Physiological responses to folate overproduction in Lactobacillus plantarum WCFS1.

Arno Wegkamp, Astrid E Mars, Magda Faijes, Douwe Molenaar, Ric C H de Vos, Sebastian M J Klaus, Andrew D Hanson, Willem M de Vos, Eddy J Smid

Abstract read
In one paragraph

Article in Microbial cell factories, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. The Carbohydrate Metabolism ofInternational journal of molecular sciences · 2021
    Article
  4. Comparative Genomic Analysis ofInternational journal of genomics · 2019
    Article
  5. Article
  6. Article
  7. MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware.Metabolomics : Official journal of the Metabolomic Society · 2012
    Article
  8. Review
  9. Article
  10. Metabolic engineering of bacteria.Indian journal of microbiology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Arno WegkampTI Food & Nutrition, Wageningen, Nieuwe Kanaal 9A, 6709 PA, Wageningen, The Netherlands.
Astrid E Mars
Magda Faijes
Douwe Molenaar
Ric C H de Vos
Sebastian M J Klaus
Andrew D Hanson
Willem M de Vos
Eddy J Smid

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUsing a functional genomics approach we addressed the impact of folate overproduction on metabolite formation and gene expression in Lactobacillus plantarum WCFS1. We focused specifically on the mechanism that reduces growth rates in folate-overproducing cells.

resultsMetabolite formation and gene expression were determined in a folate-overproducing- and wild-type strain. Differential metabolomics analysis of intracellular metabolite pools indicated that the pool sizes of 18 metabolites differed significantly between these strains. The gene expression profile was determined for both strains in pH-regulated chemostat culture and batch culture. Apart from the expected overexpression of the 6 genes of the folate gene cluster, no other genes were found to be differentially expressed both in continuous and batch cultures. The discrepancy between the low transcriptome and metabolome response and the 25% growth rate reduction of the folate overproducing strain was further investigated. Folate production per se could be ruled out as a contributing factor, since in the absence of folate production the growth rate of the overproducer was also reduced by 25%. The higher metabolic costs for DNA and RNA biosynthesis in the folate overproducing strain were also ruled out. However, it was demonstrated that folate-specific mRNAs and proteins constitute 8% and 4% of the total mRNA and protein pool, respectively.

conclusionFolate overproduction leads to very little change in metabolite levels or overall transcript profile, while at the same time the growth rate is reduced drastically. This shows that Lactobacillus plantarum WCFS1 is unable to respond to this growth rate reduction, most likely because the growth-related transcripts and proteins are diluted by the enormous amount of gratuitous folate-related transcripts and proteins.

Indexed as

Folic AcidGene Expression ProfilingGuanosine TriphosphateHydrogen-Ion ConcentrationLactiplantibacillus plantarumMetabolomeRNA, MessengerFolic AcidGuanosine TriphosphateRNA, Messenger

Identifiers

PMID21167023
PMCPMC3014895

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.