Evidence map›Paper›PMID 21167004›Full record

ArticleClinical and translational science2010

SCN5A rare variants in familial dilated cardiomyopathy decrease peak sodium current depending on the common polymorphism H558R and common splice variant Q1077del.

Jianding Cheng, Ana Morales, Jill D Siegfried, Duanxiang Li, Nadine Norton, Junyao Song, Jorge Gonzalez-Quintana, Jonathan C Makielski, Ray E Hershberger

Abstract read
In one paragraph

Article in Clinical and translational science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Review
  4. Review
  5. Article
  6. Article
  7. Identification ofInternational journal of molecular sciences · 2021
    Article
  8. Burden of Cardiomyopathic Genetic Variation in Lethal Pediatric Myocarditis.Circulation. Genomic and precision medicine · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. A common polymorphism in the SCN5A gene is associated with dilated cardiomyopathy.Journal of cardiovascular medicine (Hagerstown, Md.) · 2018
    Article
  13. Article
  14. Disease Modifiers of InheritedFrontiers in cardiovascular medicine · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Observational
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jianding ChengDivision of Cardiovascular Medicine, Department of Medicine, University of Wisconsin, Madison, Wisconsin, USA.
Ana Morales
Jill D Siegfried
Duanxiang Li
Nadine Norton
Junyao Song
Jorge Gonzalez-Quintana
Jonathan C Makielski
Ray E Hershberger

Funding

FAMILIAL DILATED CARDIOMYOPATHY--DETECTION/GENE MAPPINGR01HL058626 · NHLBI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI HERSHBERGER, RAY E. · 1998 to 2011
$6.0M
Cellular &Clinical Phenotypes of Novel SCN5a MutationsR01HL071092 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI MAKIELSKI, JONATHAN C · 2003 to 2011
$3.1M
The cardiac Na current macromolecular complex and role in arrhythmia mechanismR56HL071092 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI MAKIELSKI, JONATHAN C · 2014 to 2014
$376k
NHLBI NIH HHS HL58626NHLBI NIH HHS HL71092NHLBI NIH HHS R01 HL058626NHLBI NIH HHS R01 HL071092NHLBI NIH HHS R56 HL071092
6 · The paper itself

Abstract

Obtaining functional data with newly identified rare variants increases certainty that the variant identified is relevant for dilated cardiomyopathy (DCM) causation. Two novel SCN5A rare variants, R222Q and I1835T, segregated with DCM in two families with affected individuals homozygous or heterozygous for the common SCN5A polymorphism H558R. cDNAs with each rare variant were constructed in the common Q1077del or Q1077 splice variant backgrounds with and without the H558R polymorphism and expressed in HEK293 cells. Sodium current (I(Na) ) was studied for each using whole-cell voltage clamp. In the Q1077del background I(Na) densities of R222Q and I1835T were not different from wild type, but the combined variants of R222Q/H558R, I1835T/H558R caused approximately 35% and approximately 30% reduction, respectively, and each showed slower recovery from inactivation. In the Q1077del background R222Q and R222Q/H558R also exhibited a significant negative shift in both activation and inactivation while I1835T/H558R showed a significant negative shift in inactivation that tended to decrease window current. In contrast, expression in the Q1077 background showed no changes in peak I(Na) densities, decay, or recovery from inactivation for R222Q/H558R and I1835T/H558R. We conclude that the biophysical findings, dependent upon common SCN5A variants, provide further evidence that these novel SCN5A rare variants are relevant for DCM.

Indexed as

AdolescentAdultAlternative SplicingCardiomyopathy, DilatedFemaleHEK293 CellsHumansIon Channel GatingMaleMiddle AgedMuscle ProteinsNAV1.5 Voltage-Gated Sodium ChannelPedigreePhenotypePolymorphism, Single NucleotideSodium ChannelsMuscle ProteinsNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanSodium Channels

Identifiers

PMID21167004
PMCPMC3026282

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.