Evidence map›Paper›PMID 21165784›Full record

ArticleJournal of neurovirology2011

Nuclease resistant circular DNAs copurify with infectivity in scrapie and CJD.

Laura Manuelidis

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of neurovirology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Laura ManuelidisYale University Medical School, 333 Cedar Street, New Haven, CT 06510, USA. laura.manuelidis@yale.edu
Yale University · US

Funding

EXPERIMENTAL CREUTZFELDT-JAKOB DISEASER01NS012674 · NINDS · YALE UNIVERSITY · PI MANUELIDIS, LAURA · 1985 to 2011
$4.7M
New Animal and Culture Models to rapidly evaluate infectivity of the vCJD AgentR21AI076645 · NIAID · YALE UNIVERSITY · PI MANUELIDIS, LAURA · 2008 to 2009
$455k
NIAID NIH HHS R21 AI076645NINDS NIH HHS R01 NS012674PHS HHS R01 012674PHS HHS R21 A1076645
6 · The paper itself

Abstract

In transmissible encephalopathies (TSEs), it is commonly believed that the host prion protein transforms itself into an infectious form that encodes the many distinct TSE agent strains without any nucleic acid. Using a Ф29 polymerase and chromatography strategy, highly infectious culture and brain preparations of three different geographic TSE agents all contained novel circular DNAs. Two circular "Sphinx" sequences, of 1.8 and 2.4 kb, copurified with infectious particles in sucrose gradients and, as many protected viruses, resisted nuclease digestion. Each contained a replicase ORF related to microviridae that infect commensal Acinetobacter. Infectious gradient fractions also contained nuclease-resistant 16 kb mitochondrial DNAs and analysis of >4,000 nt demonstrated a 100% identity with their species-specific sequences. This confirmed the fidelity of the newly identified sequences detailed here. Conserved replicase regions within the two Sphinx DNAs were ultimately detected by PCR in cytoplasmic preparations from normal cells and brain but were 2,500-fold less than in parallel-infected samples. No trace of the two Sphinx replicases was found in enzymes, detergents, or other preparative materials using exhaustive PCR cycles. The Sphinx sequences uncovered here could have a role in TSE infections despite their apparently symbiotic, low-level persistence in normal cells and tissues. These, as well as other cryptic circular DNAs, may cause or contribute to neurodegeneration and infection-associated tumor transformation. The current results also raise the intriguing possibility that mammals may incorporate more of the prokaryotic world in their cytoplasm than previously recognized.

Indexed as

AcinetobacterAmino Acid SequenceAnimalsBase SequenceBrainConserved SequenceCreutzfeldt-Jakob SyndromeCricetinaeDeoxyribonucleasesDNA, CircularDNA-Directed DNA PolymeraseDNA HelicasesDNA, MitochondrialElectrophoresis, Agar GelGenome, BacterialHumansDeoxyribonucleasesDNA, CircularDNA-Directed DNA PolymeraseDNA HelicasesDNA, MitochondrialPrions

Identifiers

PMID21165784
OpenAlexW2026639391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.