Evidence map›Paper›PMID 21162531›Full record

ArticleJournal of the American Chemical Society2011

Light regulation of protein dimerization and kinase activity in living cells using photocaged rapamycin and engineered FKBP.

Andrei V Karginov, Yan Zou, David Shirvanyants, Pradeep Kota, Nikolay V Dokholyan, Douglas D Young, Klaus M Hahn, Alexander Deiters

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 147 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Standardized Parts for Activation of Small GTPase Signaling in Living Cells.Angewandte Chemie (International ed. in English) · 2024
    Article
  6. Article
  7. Review
  8. Photoactivatable Nanobody Conjugate Dimerizer Temporally Resolves Tiam1-Rac1 Signaling Axis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  9. Heterocyclic-Based Analogues against Sarcine-Ricin Loop RNA fromMedicinal chemistry (Shariqah (United Arab Emirates)) · 2024
    Article
  10. Article
  11. Allosteric regulation of kinase activity in living cells.bioRxiv : the preprint server for biology · 2023
    Article
  12. Article
  13. Allosteric inactivation of an engineered optogenetic GTPase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Andrei V KarginovDepartment of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States.
Yan Zou
David Shirvanyants
Pradeep Kota
Nikolay V Dokholyan
Douglas D Young
Klaus M Hahn
Alexander Deiters
North Carolina State University · USUniversity of North Carolina at Chapel Hill · US

Funding

STRUCTUREU54GM064346 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI IMPERIALI, BARBARA · 2001 to 2010
$74.9M
FLUORESCENT INDICATORS OF RHO AND RAN NUCLEOTIDE STATER01GM057464 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M. · 1999 to 2011
$3.5M
PREDICTIVE QSAR MODELINGR01GM066940 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TROPSHA, ALEXANDER · 2003 to 2011
$3.0M
Protein Misfolding and AggregationR01GM080742 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOKHOLYAN, NIKOLAY · 2007 to 2015
$2.8M
Switchable Systems for Spatio-Temporal Control of Gene Expression in ZebrafishR01GM079114 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI DEITERS, ALEXANDER · 2007 to 2011
$1.6M
NIGMS NIH HHS GM066940-06S1NIGMS NIH HHS GM079114NIGMS NIH HHS GM080742NIGMS NIH HHS GM080742-03S1NIGMS NIH HHS GM64346NIGMS NIH HHS R01 GM057464NIGMS NIH HHS R01 GM066940NIGMS NIH HHS R01 GM079114NIGMS NIH HHS R01 GM080742NIGMS NIH HHS U54 GM064346
6 · The paper itself

Abstract

We developed a new system for light-induced protein dimerization in living cells using a photocaged analogue of rapamycin together with an engineered rapamycin binding domain. Using focal adhesion kinase as a target, we demonstrated successful light-mediated regulation of protein interaction and localization in living cells. Modification of this approach enabled light-triggered activation of a protein kinase and initiation of kinase-induced phenotypic changes in vivo.

Indexed as

LightDimerizationFocal Adhesion Protein-Tyrosine KinasesHEK293 CellsHumansModels, MolecularMolecular Dynamics SimulationSirolimusTacrolimus Binding ProteinsFocal Adhesion Protein-Tyrosine KinasesSirolimusTacrolimus Binding Proteins

Identifiers

PMID21162531
PMCPMC3133816
OpenAlexW2084427297

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.