Evidence map›Paper›PMID 21161407›Full record

ArticleMolecular biology reports2011

Evaluation of endogenous reference genes for analysis of gene expression with real-time RT-PCR during planarian regeneration.

Yan-Qing Yuwen, Zi-Mei Dong, Qing-Hua Wang, Xiao-Juan Sun, Chang-Ying Shi, Guang-Wen Chen

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Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yan-Qing YuwenHenan Normal University, Xinxiang 453007, People's Republic of China.
Zi-Mei Dong
Qing-Hua Wang
Xiao-Juan Sun
Chang-Ying Shi
Guang-Wen Chen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is important that endogenous reference genes for real-time RT-PCR be empirically evaluated for stability in different cell types, developmental stages, and/or sample treatment. To select the most stable endogenous reference genes during planarian regeneration, three housekeeping genes, 18S rRNA, ACTB and DjEF2, were identified and established expression levels by real-time RT-PCR. The data were analyzed by GeNorm and NormFinder software. Expression levels of the Djsix-1 gene were studied in parallel with ACTB and DjEF2 both or each and 18S rRNA as reference during regeneration. The results showed that ACTB was the most stable expressed reference gene in the planarian regeneration.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsPlanariansReal-Time Polymerase Chain ReactionReference StandardsRegenerationReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSoftwareTime FactorsTranscription, GeneticRNA, Messenger

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.