Evidence map›Paper›PMID 21161377›Full record

ArticleVeterinary research communications2011

Buffalo hepcidin: characterization of cDNA and study of antimicrobial property.

Victoria Chanu Khangembam, Ashok Kumar

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Article in Veterinary research communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Victoria Chanu KhangembamDivision of Biochemistry, Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, 243122, India. vickygoitu@gmail.com
Ashok Kumar

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepcidin, a novel gene encoded, 25 residue, 2-3 KDa cysteine rich cationic peptide synthesized in liver cells play an important role in iron metabolism in addition to its antimicrobial activity. In this study hepcidin cDNA expressed on hepatocytes of Bubalus bubalis has been characterized and the antibacterial activity of buffalo hepcidin analog has been determined. The complete buffalo hepcidin sequence is of 324 bp and have an ORF of 249 nucleotides from 14 to 262. The sequence analysis at nucleotide level showed homology of 98.0% with cattle, 84.3% with pig, whereas with human, chimpanzee and gorilla 80.3%, 80.7% and 81.5% respectively. The percent identity of buffalo hepcidin cDNA to that of japanese macaque, dog, gibbon, mouse and norway rat are81.9%, 79.9%, 79.9%, 67.9% and 65.9% respectively. The hepcidin cDNA of buffalo and cattle showed a total difference of five nucleotides at position 15, 108, 225, 240 and 246 with no difference in deduced amino acid sequence. The base A(15), C(108), A(225), C(240), A(246) in cattle are replaced by G(15), G(108), G(225), T(240) and G(246) respectively in buffalo. The deduced amino acid sequence of buffalo preprohepcidin consists of 82 amino acids containing 10 strongly basic, 3 strongly acidic, 27 hydrophobic and 29 polar amino acids. The predicted molecular weight and isoelectric point (P(I)) for the peptide is 8883.67 Daltons and 8.804 respectively. Phylogenetic analysis both at nucleotide and amino acid level indicate that buffalo and cattle hepcidin sequences comprises one clad which is more closely related to pig compared to human. The chemically synthesized analog of buffalo hepcidin using Fmoc chemistry in solid phase had antibacterial activity.

Indexed as

Amino Acid SequenceAnimalsAnti-Bacterial AgentsAntimicrobial Cationic PeptidesBase SequenceBuffaloesCloning, MolecularDNA, ComplementaryEscherichia coliHepcidinsHumansMicrobial Sensitivity TestsMolecular Sequence DataPhylogenyReverse Transcriptase Polymerase Chain ReactionRNAAnti-Bacterial AgentsAntimicrobial Cationic PeptidesDNA, ComplementaryHAMP protein, humanHamp protein, mouseHamp protein, ratHepcidinsRNA

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.