Evidence map›Paper›PMID 21161235›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2011

Molecular characterization of an allelic series of mutations in the mouse Nox3 gene.

John P Flaherty, Heather E Fairfield, Catrina A Spruce, Christopher M McCarty, David E Bergstrom

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. NADPH Oxidase 3: Beyond the Inner Ear.Antioxidants (Basel, Switzerland) · 2024
    Review
  4. Article
  5. Functional cooperation between two otoconial proteins Oc90 and Nox3.Journal of vestibular research : equilibrium & orientation · 2021
    Article
  6. Review
  7. Mouse Magnetic-field Nystagmus in Strong Static Magnetic Fields Is Dependent on the Presence of Nox3.Otology & neurotology : official publication of the American Otological Society, American Neurotology Society [and] European Academy of Otology and Neurotology · 2018
    Article
  8. Article
  9. Article
  10. High throughput sequencing approaches to mutation discovery in the mouse.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
  11. siRNA-mediated knock-down of NOX3: therapy for hearing loss?Cellular and molecular life sciences : CMLS · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

John P FlahertyThe Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.
Heather E Fairfield
Catrina A Spruce
Christopher M McCarty
David E Bergstrom
Jackson Laboratory · USNew York Institute of Technology · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
MUTANT GENE RESOURCEP40RR001183 · NCRR · JACKSON LABORATORY · PI DONAHUE, LEAH RAE B · 1985 to 2011
$16.3M
NADPH Oxidase Complexes in Mammalian Vestibular FunctionR01DC007431 · NIDCD · JACKSON LABORATORY · PI BERGSTROM, DAVID ERIC · 2006 to 2009
$1.5M
NCI NIH HHS CA34196NCI NIH HHS P30 CA034196NCRR NIH HHS P40 RR001183NCRR NIH HHS RR001183NIDCD NIH HHS DC007431NIDCD NIH HHS R01 DC007431
6 · The paper itself

Abstract

The inner ear consists of the cochlea (the organ of hearing) and the vestibular system (the organs of balance). Within the vestibular system, linear acceleration and gravity are detected by the saccule and utricle. Resting above the neurosensory epithelia of these organs are otoconia, minute proteinaceous and crystalline (calcite) inertial masses that shift under the physical forces imparted by linear movements and gravity. It is the transduction and sensation of these movements and their integration with vision and proprioceptive inputs that contribute to the sensation of balance. It has been proposed that a reactive oxygen species- (ROS-) generating NADPH oxidase comprising the gene products of the Nox3, Noxo1, and Cyba genes plays a critical and constructive role in the process of inner-ear development, specifically, the deposition of otoconia. Inactivation in mouse of any of the NADPH oxidase components encoded by the Nox3, Noxo1, or Cyba gene results in the complete congenital absence of otoconia and profound vestibular dysfunction. Here we describe our use of PCR, reverse transcription-PCR (RT-PCR), and rapid amplification of cDNA ends (RACE) with traditional and high-throughput (HTP) sequencing technologies to extend and complete the molecular characterization of an allelic series of seven mutations in the Nox3 gene. Collectively, the mutation spectrum includes an endogenous retrovirus insertion, two missense mutations, a splice donor mutation, a splice acceptor mutation, premature translational termination, and a small duplication. Together, these alleles provide tools to investigate the mechanisms of otoconial deposition over development, throughout aging, and in various disease states.

Indexed as

MutationAllelesAnimalsBase SequenceDNA Mutational AnalysisEar, InnerMiceMice, Inbred C57BLMice, Inbred StrainsMolecular Sequence DataNADPH OxidasesNADPH OxidasesNox3 protein, mouse

Identifiers

PMID21161235
PMCPMC3056917
OpenAlexW2022602642

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.