Evidence map›Paper›PMID 21160077›Full record

ArticleScience translational medicine2010

Genetic correction of PSA values using sequence variants associated with PSA levels.

Julius Gudmundsson, Soren Besenbacher, Patrick Sulem, Daniel F Gudbjartsson, Isleifur Olafsson, Sturla Arinbjarnarson, Bjarni A Agnarsson, Kristrun R Benediktsdottir, Helgi J Isaksson, Jelena P Kostic and 39 more

Abstract read
In one paragraph

Article in Science translational medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 8 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 8 syntheses or guidelines pooled it, 165 citations in OpenAlex.

  1. Predicted Proteome Association Studies of Breast, Prostate, Ovarian, and Endometrial Cancers Implicate Plasma Protein Regulation in Cancer Susceptibility.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
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  4. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2014
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

49 authors at 5 institutions in 4 countries.

Julius GudmundssondeCODE genetics, IS-101 Reykjavik, Iceland. julius@decode.is
Soren Besenbacher
Patrick Sulem
Daniel F Gudbjartsson
Isleifur Olafsson
Sturla Arinbjarnarson
Bjarni A Agnarsson
Kristrun R Benediktsdottir
Helgi J Isaksson
Jelena P Kostic
Sigurjon A Gudjonsson
Simon N Stacey
Arnaldur Gylfason
Asgeir Sigurdsson
Hilma Holm
Unnur S Bjornsdottir
Gudmundur I Eyjolfsson
Sebastian Navarrete
Fernando Fuertes
Maria D Garcia-Prats
Eduardo Polo
Ionel A Checherita
Mariana Jinga
Paula Badea
Katja K Aben
Jack A Schalken
Inge M van Oort
Fred C Sweep
Brian T Helfand
Michael Davis
Jenny L Donovan
Freddie C Hamdy
Kristleifur Kristjansson
Jeffrey R Gulcher
Gisli Masson
Augustine Kong
William J Catalona
Jose I Mayordomo
Gudmundur Geirsson
Gudmundur V Einarsson
Rosa B Barkardottir
Eirikur Jonsson
Viorel Jinga
Dana Mates
Lambertus A Kiemeney
David E Neal
Unnur Thorsteinsdottir
Thorunn Rafnar
Kari Stefansson
University of Iceland · ISNorthwestern University · USUniversity of Bristol · GBJohn Radcliffe Hospital · GBRadboud University Medical Center · NL

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
SUPPRESSIVE ROLE OF ANDROGEN RESPONSE GENE CALRETICULIN IN PROSTATE CANCERP50CA090386 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CRAWFORD, SUSAN · 2001 to 2013
$25.1M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
Cancer Research UK C522/A8649Department of HealthMedical Research Council G0500966Medical Research Council ID 75466NCI NIH HHS P30 CA060553NCI NIH HHS P30 CA60553NCI NIH HHS P50 CA090386NCI NIH HHS P50 CA90386-05S2NCRR NIH HHS UL1 RR025741
6 · The paper itself

Abstract

Measuring serum levels of the prostate-specific antigen (PSA) is the most common screening method for prostate cancer. However, PSA levels are affected by a number of factors apart from neoplasia. Notably, around 40% of the variability of PSA levels in the general population is accounted for by inherited factors, suggesting that it may be possible to improve both sensitivity and specificity by adjusting test results for genetic effects. To search for sequence variants that associate with PSA levels, we performed a genome-wide association study and follow-up analysis using PSA information from 15,757 Icelandic and 454 British men not diagnosed with prostate cancer. Overall, we detected a genome-wide significant association between PSA levels and single-nucleotide polymorphisms (SNPs) at six loci: 5p15.33 (rs2736098), 10q11 (rs10993994), 10q26 (rs10788160), 12q24 (rs11067228), 17q12 (rs4430796), and 19q13.33 [rs17632542 (KLK3: I179T)], each with P(combined) <3 × 10(-10). Among 3834 men who underwent a biopsy of the prostate, the 10q26, 12q24, and 19q13.33 alleles that associate with high PSA levels are associated with higher probability of a negative biopsy (odds ratio between 1.15 and 1.27). Assessment of association between the six loci and prostate cancer risk in 5325 cases and 41,417 controls from Iceland, the Netherlands, Spain, Romania, and the United States showed that the SNPs at 10q26 and 12q24 were exclusively associated with PSA levels, whereas the other four loci also were associated with prostate cancer risk. We propose that a personalized PSA cutoff value, based on genotype, should be used when deciding to perform a prostate biopsy.

Indexed as

Biomarkers, TumorEarly Detection of CancerGenetic MarkersHumansKallikreinsMalePolymorphism, Single NucleotideProstate-Specific AntigenProstatic NeoplasmsProstatic Secretory ProteinsReceptor, Fibroblast Growth Factor, Type 2T-Box Domain ProteinsTelomerasebeta-microseminoproteinBiomarkers, TumorFGFR2 protein, humanGenetic MarkersKallikreinsKLK3 protein, humanProstate-Specific AntigenProstatic Secretory ProteinsReceptor, Fibroblast Growth Factor, Type 2T-Box Domain ProteinsTBX3 protein, humanTelomeraseTERT protein, human

Identifiers

PMID21160077
PMCPMC3564581
OpenAlexW2031852598

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.