Evidence map›Paper›PMID 21159929›Full record

ArticleJournal of clinical microbiology2011

Most cases of cryptococcal meningitis in HIV-uninfected patients in Vietnam are due to a distinct amplified fragment length polymorphism-defined cluster of Cryptococcus neoformans var. grubii VN1.

Jeremy N Day, Thu N Hoang, Anh V Duong, Chau T T Hong, Pham T Diep, James I Campbell, Tran P M Sieu, Tran T Hien, Tien Bui, Maciej F Boni and 4 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03112031 (A Randomized Trial of Tamoxifen Combined With Amphotericin B and Fluconazole for Cryptococcal Meningitis), which is not on this map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03112031 phase2completednot on this mapstarted 2017, after this paper: background citation

A Randomized Trial of Tamoxifen Combined With Amphotericin B and Fluconazole for Cryptococcal Meningitis

TypeinterventionalSponsorOxford University Clinical Research Unit, VietnamRan2017 to 2018Enrolled50ConditionsMeningitis Streptococcal, Hiv, Meningitis, MeningoencephalitisArmsTamoxifen, Amphotericin B, Fluconazole
3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Importance of Clinical Isolates inJournal of fungi (Basel, Switzerland) · 2023
    Review
  7. ExploringJournal of fungi (Basel, Switzerland) · 2022
    Article
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  11. Review
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  19. Sexual reproduction of human fungal pathogens.Cold Spring Harbor perspectives in medicine · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Jeremy N DayOxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam. jday@oucru.org
Thu N Hoang
Anh V Duong
Chau T T Hong
Pham T Diep
James I Campbell
Tran P M Sieu
Tran T Hien
Tien Bui
Maciej F Boni
David G Lalloo
Dee Carter
Stephen Baker
Jeremy J Farrar
Oxford University Clinical Research Unit · VNHospital for Tropical Diseases · VNUniversity of Sydney · AULiverpool School of Tropical Medicine · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Cryptococcal disease most commonly occurs in patients with an underlying immune deficit, most commonly HIV infection, and is due to Cryptococcus neoformans var. grubii. Occasionally disease due to this variety occurs in apparently immunocompetent patients. The relationship between strains infecting immunosuppressed and immunocompetent patients is not clear. Amplified fragment length polymorphism (AFLP) analysis was used to characterize the relationship between strains infecting HIV-infected and uninfected patients. Isolates from 51 HIV-uninfected patients and 100 HIV-infected patients with cryptococcal meningitis were compared. C. neoformans var. grubii VNI was responsible for infections in 73% of HIV-uninfected and 100% of HIV-infected patients. AFLP analysis defined two distinct clusters, VNIγ and VNIδ. The majority (84%) of isolates from HIV-uninfected patients were VNIγ, compared with only 38% of isolates from HIV-infected patients (odds ratio, 8.30; 95% confidence interval [CI], 3.04 to 26.6; P < 0.0001). In HIV-uninfected patients, underlying disease was less frequent in those with VNIγ infections. Two clusters of C. neoformans var. grubii VN1 are responsible for the majority of cases of cryptococcal meningitis in Vietnam. The distribution of these clusters differs according to the immune status of the host.

Indexed as

Amplified Fragment Length Polymorphism AnalysisMycological Typing TechniquesAdolescentAdultAgedCluster AnalysisCryptococcus neoformansDNA, FungalFemaleGenotypeHIV InfectionsHumansMaleMeningitis, CryptococcalMiddle AgedMolecular EpidemiologyDNA, Fungal

Identifiers

PMID21159929
PMCPMC3043508
OpenAlexW2133070164

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.