Evidence map›Paper›PMID 21159780›Full record

ArticleThe Journal of biological chemistry2011

Short double-stranded RNAs with an overhanging 5' ppp-nucleotide, as found in arenavirus genomes, act as RIG-I decoys.

Jean-Baptiste Marq, Stéphane Hausmann, Nicolas Veillard, Daniel Kolakofsky, Dominique Garcin

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  5. Lassa Virus Genetics.Current topics in microbiology and immunology · 2023
    Article
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  7. Review
  8. Review
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  12. Article
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  17. Article
  18. Article
  19. Article
  20. New World Arenavirus Biology.Annual review of virology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jean-Baptiste MarqDepartment of Microbiology and Molecular Medicine, University of Geneva School of Medicine, CMU, 1 Rue Michel-Servet, 1211 Geneva, Switzerland.
Stéphane Hausmann
Nicolas Veillard
Daniel Kolakofsky
Dominique Garcin
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arenavirus RNA genomes are initiated by a "prime and realign" mechanism, such that the initiating GTP is found as a single unpaired (overhanging) nucleotide when the complementary genome ends anneal to form double-stranded (ds) RNA panhandle structures. dsRNAs modeled on these structures do not induce interferon (IFN), as opposed to blunt-ended (5' ppp)dsRNA. This study examines whether these viral structures can also act as decoys, by trapping RIG-I in inactive dsRNA complexes. We examined the ability of various dsRNAs to activate the RIG-I ATPase (presumably a measure of helicase translocation on dsRNA) relative to their ability to induce IFN. We found that there is no simple relationship between these two properties, as if RIG-I can translocate on short dsRNAs without inducing IFN. Moreover, we found that (5' ppp)dsRNAs with a single unpaired 5' ppp-nucleotide can in fact competitively inhibit the ability of blunt-ended (5' ppp)dsRNAs to induce IFN when co-transfected into cells and that this inhibition is strongly dependent on the presence of the 5' ppp. In contrast, (5' ppp)dsRNAs with a single unpaired 5' ppp-nucleotide does not inhibit poly(I-C)-induced IFN activation, which is independent of the presence of a 5' ppp group.

Indexed as

ArenavirusCell LineDEAD Box Protein 58DEAD-box RNA HelicasesEnzyme ActivationGenome, ViralHumansInterferon InducersInterferonsPoly I-CReceptors, ImmunologicRNA, Double-StrandedRNA, Viral5'PPP-RNADEAD Box Protein 58DEAD-box RNA HelicasesInterferon InducersInterferonsPoly I-CReceptors, ImmunologicRIGI protein, humanRNA, Double-StrandedRNA, Viral

Identifiers

PMID21159780
PMCPMC3057789
OpenAlexW2033191551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.