Evidence map›Paper›PMID 21158478›Full record

ArticleBiochemistry2011

Elucidating the role of the proximal cysteine hydrogen-bonding network in ferric cytochrome P450cam and corresponding mutants using magnetic circular dichroism spectroscopy.

Mary Grace I Galinato, Tatyana Spolitak, David P Ballou, Nicolai Lehnert

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. The relationships between cytochromes P450 and HJournal of inorganic biochemistry · 2018
    Review
  8. Spectroscopic studies of the cytochrome P450 reaction mechanisms.Biochimica et biophysica acta. Proteins and proteomics · 2018
    Review
  9. Article
  10. Exploring second coordination sphere effects in nitric oxide synthase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  11. Article
  12. Hydrogen Sulfide Oxidation by Myoglobin.Journal of the American Chemical Society · 2016
    Article
  13. Met(104) is the CO-replaceable ligand at Fe(II) heme in the CO-sensing transcription factor BxRcoM-1.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  14. Valence tautomerism in synthetic models of cytochrome P450.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Redox-dependent stability, protonation, and reactivity of cysteine-bound heme proteins.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  20. Driving force for oxygen-atom transfer by heme-thiolate enzymes.Angewandte Chemie (International ed. in English) · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Mary Grace I GalinatoDepartment of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.
Tatyana Spolitak
David P Ballou
Nicolai Lehnert
University of Michigan–Ann Arbor · US

Funding

RAPID KINETICS STUDY OF BIOLOGICAL OXYGENASESR01GM020877 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALLOU, DAVID P · 1985 to 2009
$2.2M
RAPID KINETIC &OTHER STUDIES OF BIOLOGICAL OXYGENASESR37GM020877 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BALLOU, DAVID P · 1992 to 2002
$637k
MECHANISMS OF MEMBRANE FUSIONF32GM020877 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI HODGES, ALEX R · 2001 to 2003
$91k
NIGMS NIH HHS F32 GM020877NIGMS NIH HHS GM20877NIGMS NIH HHS R01 GM020877NIGMS NIH HHS R37 GM020877
6 · The paper itself

Abstract

Although extensive research has been performed on various cytochrome P450s, especially Cyt P450cam, there is much to be learned about the mechanism of how its functional unit, a heme b ligated by an axial cysteine, is finely tuned for catalysis by its second coordination sphere. Here we study how the hydrogen-bonding network affects the proximal cysteine and the Fe-S(Cys) bond in ferric Cyt P450cam. This is accomplished using low-temperature magnetic circular dichroism (MCD) spectroscopy on wild-type (wt) Cyt P450cam and on the mutants Q360P (pure ferric high-spin at low temperature) and L358P where the "Cys pocket" has been altered (by removing amino acids involved in the hydrogen-bonding network), and Y96W (pure ferric low-spin). The MCD spectrum of Q360P reveals fourteen electronic transitions between 15200 and 31050 cm(-1). Variable-temperature variable-field (VTVH) saturation curves were used to determine the polarizations of these electronic transitions with respect to in-plane (xy) and out-of-plane (z) polarization relative to the heme. The polarizations, oscillator strengths, and TD-DFT calculations were then used to assign the observed electronic transitions. In the lower energy region, prominent bands at 15909 and 16919 cm(-1) correspond to porphyrin (P) → Fe charge transfer (CT) transitions. The band at 17881 cm(-1) has distinct sulfur S(π) → Fe CT contributions. The Q band is observed as a pseudo A-term (derivative shape) at 18604 and 19539 cm(-1). In the case of the Soret band, the negative component of the expected pseudo A-term is split into two features due to mixing with another π → π* and potentially a P → Fe CT excited state. The resulting three features are observed at 23731, 24859, and 25618 cm(-1). Most importantly, the broad, prominent band at 28570 cm(-1) is assigned to the S(σ) → Fe CT transition, whose intensity is generated through a multitude of CT transitions with strong iron character. For wt, Q360P, and L358P, this band occurs at 28724, 28570, and 28620 cm(-1), respectively. The small shift of this feature upon altering the hydrogen bonds to the proximal cysteine indicates that the role of the Cys pocket is not primarily for electronic fine-tuning of the sulfur donor strength but is more for stabilizing the proximal thiolate against external reactants (NO, O(2), H(3)O(+)), and for properly positioning cysteine to coordinate to the iron center. This aspect is discussed in detail.

Indexed as

MutationBinding SitesCamphor 5-MonooxygenaseCatalysisCircular DichroismCysteineHydrogen BondingModels, MolecularSpectrum Analysis, RamanCamphor 5-MonooxygenaseCysteine

Identifiers

PMID21158478
PMCPMC3035745
OpenAlexW2065172845

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.