Evidence map›Paper›PMID 21156810›Full record

ArticleGenes & development2011

Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b.

Meimei Wang, Takashi Soyano, Satoru Machida, Jun-Yi Yang, Choonkyun Jung, Nam-Hai Chua, Y Adam Yuan

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. An antisense intragenic lncRNA SEAIRa mediates transcriptional and epigenetic repression ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Proteomic Analysis of Proteins Related to Defense Responses inInternational journal of molecular sciences · 2023
    Article
  7. ADP-ribosylation systems in bacteria and viruses.Computational and structural biotechnology journal · 2021
    Review
  8. Article
  9. Article
  10. Small RNAs Derived from the T-DNA ofFrontiers in plant science · 2017
    Article
  11. Article
  12. Review
  13. The natural history of ADP-ribosyltransferases and the ADP-ribosylation system.Current topics in microbiology and immunology · 2015
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Meimei WangDepartment of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.
Takashi Soyano
Satoru Machida
Jun-Yi Yang
Choonkyun Jung
Nam-Hai Chua
Y Adam Yuan
Rockefeller University · USTemasek Life Sciences Laboratory · SG

Funding

LIGHT-RESPONSIVE GENESR01GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 1991 to 2011
$5.3M
Light Responsive GenesR56GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 2007 to 2007
$542k
NIGMS NIH HHS GM44640NIGMS NIH HHS R01 GM044640NIGMS NIH HHS R56 GM044640
6 · The paper itself

Abstract

The Agrobacterium Ti plasmid (T-DNA) 6b proteins interact with many different host proteins implicated in plant cell proliferation. Here, we show that Arabidopsis plants overexpressing 6b display microRNA (miRNA) deficiency by directly targeting SERRATE and AGO1 via a specific loop fragment (residues 40-55). In addition, we report the crystal structures of Agrobacterium tumefaciens AK6b at 2.1 Å, Agrobacterium vitis AB6b at 1.65 Å, and Arabidopsis ADP ribosylation factor (ARF) at 1.8 Å. The 6b structure adopts an ADP-ribosylating toxin fold closely related to cholera toxin. In vitro ADP ribosylation analysis demonstrates that 6b represents a new toxin family, with Tyr 66, Thr 93, and Tyr 153 as the ADP ribosylation catalytic residues in the presence of Arabidopsis ARF and GTP. Our work provides molecular insights, suggesting that 6b regulates plant cell growth by the disturbance of the miRNA pathway through its ADP ribosylation activity.

Indexed as

ADP-Ribosylation FactorsAgrobacterium tumefaciensArabidopsisArabidopsis ProteinsArgonaute ProteinsBacterial ProteinsBacterial ToxinsCalcium-Binding ProteinsCell ProliferationDNA, BacterialIntercellular Signaling Peptides and ProteinsMembrane ProteinsMicroRNAsRNA-Binding ProteinsSerrate-Jagged ProteinsADP-Ribosylation FactorsAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsBacterial ProteinsBacterial ToxinsCalcium-Binding ProteinsDNA, BacterialIntercellular Signaling Peptides and ProteinsMembrane ProteinsMicroRNAsRNA-Binding ProteinsSE protein, ArabidopsisSerrate-Jagged ProteinsT-DNA

Identifiers

PMID21156810
PMCPMC3012937
OpenAlexW2166962517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.