Evidence map›Paper›PMID 21156121›Full record

ArticleBiophysical journal2010

Conformational rearrangements to the intracellular open states of the LeuT and ApcT transporters are modulated by common mechanisms.

Lei Shi, Harel Weinstein

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. The LeuT-fold neurotransmitter:sodium symporter MhsT has two substrate sites.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. The Environment Shapes the Inner Vestibule of LeuT.PLoS computational biology · 2016
    Article
  13. Article
  14. Conformational cycle and ion-coupling mechanism of the Na+/hydantoin transporter Mhp1.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Chloride binding site of neurotransmitter sodium symporters.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Lei ShiDepartment of Physiology and Biophysics, and HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medical College of Cornell University, New York, New York, USA. les2007@med.cornell.edu
Harel Weinstein

Funding

STRUCTURE/FUNCTION OF THE HUMAN DOPAMINE TRANSPORTERP01DA012408 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI WEINSTEIN, HAREL · 1999 to 2015
$14.2M
The Neurotransmitter: Sodium Symporter Permeation PathwayR00DA023694 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SHI, LEI · 2010 to 2012
$725k
The Neurotransmitter: Sodium Symporter Permeation PathwayK99DA023694 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SHI, LEI · 2008 to 2009
$180k
NIDA NIH HHS DA023694NIDA NIH HHS DA12408NIDA NIH HHS K99 DA023694NIDA NIH HHS P01 DA012408NIDA NIH HHS R00 DA023694
6 · The paper itself

Abstract

Recent crystallographic studies revealed that five transporter families without much sequence similarities among them have similar structure folds to LeuT, a bacterial neurotransmitter:sodium symporter homolog. The LeuT fold is characterized by an internal twofold structural pseudosymmetry. The transport cycle of some members of each of these families is dependent on a sodium gradient across the membrane, whereas in some others the role of sodium is mimicked by proton. We report on the identification of common structure-dynamics elements of the transporters with LeuT fold, which are recognizable in the conformational transitions related to function. The findings from comparative computational modeling and simulation studies of LeuT, and ApcT from the amino acid-polyamine-organocation transporter family define the intramolecular mechanisms by which Na+ binding couples to the transport process, and single out the lead/active role of TM1a in the transition to inward-open conformation. These mechanistic insights are derived in the context of collaborative investigations of LeuT dynamics with both single-molecule fluorescence and simulations that have produced excellent agreement of the dynamic details, and are found to be generalizable across the transporter families and to transcend sequence and motif similarities.

Indexed as

Binding SitesIntracellular SpaceModels, MolecularPlasma Membrane Neurotransmitter Transport ProteinsProtein ConformationSodiumStructure-Activity RelationshipPlasma Membrane Neurotransmitter Transport ProteinsSodium

Identifiers

PMID21156121
PMCPMC3000488

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.