Evidence map›Paper›PMID 21153485›Full record

ArticleBreast cancer research and treatment2011

A long AAAG repeat allele in the 5' UTR of the ERR-γ gene is correlated with breast cancer predisposition and drives promoter activity in MCF-7 breast cancer cells.

C L Galindo, J F McCormick, V J Bubb, D H Abid Alkadem, Long-Shan Li, L J McIver, A C George, D A Boothman, J P Quinn, M A Skinner and 1 more

Abstract read
In one paragraph

Article in Breast cancer research and treatment, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

C L GalindoVirginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24601-0477, USA.
J F McCormick
V J Bubb
D H Abid Alkadem
Long-Shan Li
L J McIver
A C George
D A Boothman
J P Quinn
M A Skinner
H R Garner
Virginia Tech · USThe University of Texas Southwestern Medical Center · USUniversity of Liverpool · GB

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GIBBONS, DON LYNN · 1996 to 2024
$57.4M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
DNA MISMATCH REPAIR IN FDURD INDUCED CYTOTOXICITYR01CA083196 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI BOOTHMAN, DAVID A · 1999 to 2002
$617k
NCI NIH HHS P30 CA013148NCI NIH HHS P30 CA142543NCI NIH HHS P50 CA070907NCI NIH HHS P50CA70907
6 · The paper itself

Abstract

We sequenced the 5' UTR of the estrogen-related receptor gamma gene (ERR-γ) in ~500 patient and volunteer samples and found that longer alleles of the (AAAG)(n) microsatellite were statistically and significantly more likely to exist in the germlines of breast cancer patients when compared to healthy volunteers. This microsatellite region contains multiple binding sites for a number of transcription factors, and we hypothesized that the polymorphic AAAG-containing sequence in the 5' UTR region of ERR-γ might modulate expression of ERR-γ. We found that the 369 bp PCR product containing the AAAG repeat drove expression of a reporter gene in estrogen receptor positive breast cancer cells. Our results support a role for the 5' UTR region in ERR-γ expression, which is potentially mediated via binding to the variable tandem AAAG repeat, the length of which correlates with breast cancer pre-disposition. Our study indicates that the AAAG tetranucleotide repeat polymorphism in ERR-γ gene 5' UTR region may be a new biomarker for genetic susceptibility to breast cancer.

Indexed as

5' Untranslated RegionsAllelesGenetic Predisposition to DiseaseMicrosatellite RepeatsPromoter Regions, GeneticAnimalsBase SequenceBiomarkers, TumorBreast NeoplasmsCell Line, TumorFemaleGenes, ReporterGenotypeHumansMolecular Sequence DataPolymorphism, Genetic5' Untranslated RegionsBiomarkers, Tumorestrogen receptor gammaReceptors, Estrogen

Identifiers

PMID21153485
PMCPMC3374865
OpenAlexW2112987549

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.