Evidence map›Paper›PMID 21151874›Full record

ArticlePloS one2010

Topology of the C-terminal tail of HIV-1 gp41: differential exposure of the Kennedy epitope on cell and viral membranes.

Jonathan D Steckbeck, Chengqun Sun, Timothy J Sturgeon, Ronald C Montelaro

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 37 citations in OpenAlex.

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  12. The cytoplasmic tail of retroviral envelope glycoproteins.Progress in molecular biology and translational science · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jonathan D SteckbeckCenter for Vaccine Research, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Chengqun Sun
Timothy J Sturgeon
Ronald C Montelaro
University of Pittsburgh · US

Funding

PITT AIDS RESEARCH TRAINING PROGRAMT32AI065380 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BARRATT-BOYES, SIMON M · 2005 to 2020
$3.2M
Topology, Antigenicity, and Immunogenicity of the C-terminal Tail (CTT) of HIV-1R01AI087533 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MONTELARO, RONALD C · 2010 to 2014
$2.6M
Evaluation of HIV-1 Env intracytoplasmic domain as an AIDS vaccine immunogenR21AI070033 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MONTELARO, RONALD C · 2006 to 2007
$424k
NIAID NIH HHS 1R21 AI070033NIAID NIH HHS 5T32 AI065380-05NIAID NIH HHS R01 AI087533NIAID NIH HHS R21 AI070033NIAID NIH HHS T32 AI065380
6 · The paper itself

Abstract

The C-terminal tail (CTT) of the HIV-1 gp41 envelope (Env) protein is increasingly recognized as an important determinant of Env structure and functional properties, including fusogenicity and antigenicity. While the CTT has been commonly referred to as the "intracytoplasmic domain" based on the assumption of an exclusive localization inside the membrane lipid bilayer, early antigenicity studies and recent biochemical analyses have produced a credible case for surface exposure of specific CTT sequences, including the classical "Kennedy epitope" (KE) of gp41, leading to an alternative model of gp41 topology with multiple membrane-spanning domains. The current study was designed to test these conflicting models of CTT topology by characterizing the exposure of native CTT sequences and substituted VSV-G epitope tags in cell- and virion-associated Env to reference monoclonal antibodies (MAbs). Surface staining and FACS analysis of intact, Env-expressing cells demonstrated that the KE is accessible to binding by MAbs directed to both an inserted VSV-G epitope tag and the native KE sequence. Importantly, the VSV-G tag was only reactive when inserted into the KE; no reactivity was observed in cells expressing Env with the VSV-G tag inserted into the LLP2 domain. In contrast to cell-surface expressed Env, no binding of KE-directed MAbs was observed to Env on the surface of intact virions using either immune precipitation or surface plasmon resonance spectroscopy. These data indicate apparently distinct CTT topologies for virion- and cell-associated Env species and add to the case for a reconsideration of CTT topology that is more complex than currently envisioned.

Indexed as

Amino Acid SequenceCell SeparationDetergentsEpitopesFlow CytometryHIV-1HIV Envelope Protein gp41HumansLipid BilayersMembrane GlycoproteinsMolecular Sequence DataProtein ConformationProtein Structure, TertiarySequence Homology, Amino AcidSurface Plasmon ResonanceViral Envelope ProteinsDetergentsEpitopesgp41 protein, Human immunodeficiency virus 1G protein, vesicular stomatitis virusHIV Envelope Protein gp41Lipid BilayersMembrane GlycoproteinsViral Envelope Proteins

Identifiers

PMID21151874
PMCPMC2998427
OpenAlexW2122043122

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.