Evidence map›Paper›PMID 21151135›Full record

ArticleNature methods2011

Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Jeffry D Sander, Elizabeth J Dahlborg, Mathew J Goodwin, Lindsay Cade, Feng Zhang, Daniel Cifuentes, Shaun J Curtin, Jessica S Blackburn, Stacey Thibodeau-Beganny, Yiping Qi and 13 more

Abstract read
In one paragraph

Article in Nature methods, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 245 papers.

0numbers the graph read from it
0cells of the map it votes in
245citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

245 citing papers in PubMed.

  1. Review
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  16. Review
  17. Simplified CRISPR-Mediated DNA Editing in Multicellular Eukaryotes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  18. Genome Editing and Diabetic Cardiomyopathy.Advances in experimental medicine and biology · 2023
    Article
  19. Review
  20. Article

185 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Jeffry D SanderMolecular Pathology Unit and Center for Cancer Research, Massachusetts General Hospital, Charlestown, Massachusetts, USA.
Elizabeth J Dahlborg
Mathew J Goodwin
Lindsay Cade
Feng Zhang
Daniel Cifuentes
Shaun J Curtin
Jessica S Blackburn
Stacey Thibodeau-Beganny
Yiping Qi
Christopher J Pierick
Ellen Hoffman
Morgan L Maeder
Cyd Khayter
Deepak Reyon
Drena Dobbs
David M Langenau
Robert M Stupar
Antonio J Giraldez
Daniel F Voytas
Randall T Peterson
Jing-Ruey J Yeh
J Keith Joung

Funding

MOLECULAR IMMUNOLOGY AND TUMOR BIOLOGYT32CA009216 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Michael Langenau · 1985 to 2026
$10.6M
ADVANCING ZINC FINGER NUCLEASES FOR TARGETED GENOME MANIPULATIONR01GM088040 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH, PETERSON, RANDALL T · 2009 to 2016
$4.5M
The Role of MicroRNAs in Vertebrate DevelopmentR01GM081602 · NIGMS · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J · 2007 to 2016
$2.9M
Genomic Profiling and Functional Mutation Analysis in Autism Spectrum DisordersRC2MH089956 · NIMH · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J, STATE, MATTHEW W. · 2009 to 2010
$2.2M
Advancing stem cell technologies using engineered zinc finger proteinsDP1OD006862 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2010 to 2011
$1.8M
Discovering chemical tools for acute myelogenous leukemiaR01CA140188 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI YEH, JING-RUEY JOANNA · 2010 to 2014
$1.8M
Studies of NRSF/REST Zinc Finger-DNA InteractionsR01GM069906 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2004 to 2008
$1.6M
DNA-binding specificities of Cys2His2 zinc fingersR24GM078369 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI JOUNG, J. KEITH · 2007 to 2010
$1.5M
Identification of self-renewal programs in muscle stem cellsK01AR055619 · NIAMS · MASSACHUSETTS GENERAL HOSPITAL · PI LANGENAU, DAVID MICHAEL · 2008 to 2012
$743k
Age factors, mutations, and chemical suppressors of acute myelogenous leukemiaK01AG031300 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI YEH, JING-RUEY JOANNA · 2008 to 2012
$662k
NCI NIH HHS R01 CA140188NCI NIH HHS T32 CA009216NIAMS NIH HHS K01 AR055619NIA NIH HHS K01 AG031300NIGMS NIH HHS GM088040NIGMS NIH HHS R01 GM069906NIGMS NIH HHS R01 GM081602NIGMS NIH HHS R01 GM088040NIGMS NIH HHS R24 GM078369NIH HHS DP1 OD006862NIMH NIH HHS RC2 MH089956
6 · The paper itself

Abstract

Engineered zinc-finger nucleases (ZFNs) enable targeted genome modification. Here we describe context-dependent assembly (CoDA), a platform for engineering ZFNs using only standard cloning techniques or custom DNA synthesis. Using CoDA-generated ZFNs, we rapidly altered 20 genes in Danio rerio, Arabidopsis thaliana and Glycine max. The simplicity and efficacy of CoDA will enable broad adoption of ZFN technology and make possible large-scale projects focused on multigene pathways or genome-wide alterations.

Indexed as

Protein EngineeringAnimalsArabidopsisDNA-Binding ProteinsEndonucleasesGenomeGlycine maxZebrafishZinc FingersDNA-Binding ProteinsEndonucleases

Identifiers

PMID21151135
PMCPMC3018472

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.