ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2011
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.
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Who cites it
116 citing papers in PubMed, 332 citations in OpenAlex.
- Molecular and metabolic drivers of oil quality and bioenergy potential in Jatropha curcas.Planta · 2026Article
- SBP-Box Transcription Factor JcSPL9 Regulates Both Seed Yield and Oil Content in the Biofuel Plant Jatropha curcas.Plant biotechnology journal · 2026Article
- Metabolite comparative variation related lipid metabolisms among fruit, leaf, and stem ofHeliyon · 2024Article
- Differential amplification of the subtelomeric satellite DNA JcSAT1 in the genus Jatropha L. (Euphorbiaceae).Genetica · 2024Article
- Genomic basis of the giga-chromosomes and giga-genome of tree peony Paeonia ostii.Nature communications · 2022Article
- Genotyping by sequencing-based linkage map construction and identification of quantitative trait loci for yield-related traits and oil content in Jatropha (Jatropha curcas L.).Molecular biology reports · 2022Article
- Genome-Wide Identification, Expression Patterns and Sugar Transport of the Physic NutInternational journal of molecular sciences · 2022Article
- Genome-Wide Characterization of DGATs and Their Expression Diversity Analysis in Response to Abiotic Stresses inPlants (Basel, Switzerland) · 2022Article
- Heterologous Expression ofInternational journal of molecular sciences · 2022Article
- Genomic insights into lineage-specific evolution of the oleosin family in Euphorbiaceae.BMC genomics · 2022Article
- Ectopic Expression ofInternational journal of molecular sciences · 2022Article
- Monitoring casbene synthase in Jatropha curcas tissues using targeted proteomics.Plant methods · 2021Article
- Genomewide comparative analysis of codon usage bias in three sequencedJournal of genetics · 2021Article
- Development of genome wide transposable elements based repeat junction markers in Jatropha (Jatropha curcas L.).Molecular biology reports · 2020Article
- Identification and characterization of long non-coding RNA (lncRNA) in the developing seeds of Jatropha curcas.Scientific reports · 2020Article
- Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas.BMC genomics · 2020Article
- Exploitation of Hi-C sequencing for improvement of genome assembly and in-vitro validation of differentially expressing genes in3 Biotech · 2020Article
- Article
- JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants.BMC genomics · 2019Article
- Novel findings to the biosynthetic pathway of magnoflorine and taspine through transcriptomic and metabolomic analysis of Croton draco (Euphorbiaceae).BMC plant biology · 2019Article
56 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
36 authors at 7 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The whole genome of Jatropha curcas was sequenced, using a combination of the conventional Sanger method and new-generation multiplex sequencing methods. Total length of the non-redundant sequences thus obtained was 285 858 490 bp consisting of 120 586 contigs and 29 831 singlets. They accounted for ~95% of the gene-containing regions with the average G + C content was 34.3%. A total of 40 929 complete and partial structures of protein encoding genes have been deduced. Comparison with genes of other plant species indicated that 1529 (4%) of the putative protein-encoding genes are specific to the Euphorbiaceae family. A high degree of microsynteny was observed with the genome of castor bean and, to a lesser extent, with those of soybean and Arabidopsis thaliana. In parallel with genome sequencing, cDNAs derived from leaf and callus tissues were subjected to pyrosequencing, and a total of 21 225 unigene data have been generated. Polymorphism analysis using microsatellite markers developed from the genomic sequence data obtained was performed with 12 J. curcas lines collected from various parts of the world to estimate their genetic diversity. The genomic sequence and accompanying information presented here are expected to serve as valuable resources for the acceleration of fundamental and applied research with J. curcas, especially in the fields of environment-related research such as biofuel production. Further information on the genomic sequences and DNA markers is available at http://www.kazusa.or.jp/jatropha/.
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