ArticleDatabase : the journal of biological databases and curation2010
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle.
Article in Database : the journal of biological databases and curation, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Reproductive Suppression Caused by Spermatogenic Arrest: Transcriptomic Evidence from a Non-Social Animal.International journal of molecular sciences · 2023Article
- Combined RNA/tissue profiling identifies novel Cancer/testis genes.Molecular oncology · 2021Article
- MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis.Frontiers in cell and developmental biology · 2021Article
- EXOSC10/Rrp6 is post-translationally regulated in male germ cells and controls the onset of spermatogenesis.Scientific reports · 2017Article
- The BioGRID interaction database: 2017 update.Nucleic acids research · 2017Article
- Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2016Article
- Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.RNA biology · 2016Article
- Meiotic chromosome mobility in fission yeast is resistant to environmental stress.Scientific reports · 2016Article
- Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification.Molecular genetics and genomics : MGG · 2015Article
- The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.Nucleic acids research · 2015Article
- The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic acids research · 2015Article
- Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.Journal of proteomics · 2015Article
- The BioGRID interaction database: 2015 update.Nucleic acids research · 2015Article
- Decreased expression of genes associated with memory and x-linked mental retardation in boys with non-syndromic cryptorchidism and high infertility risk.Molecular syndromology · 2014Article
- MeioBase: a comprehensive database for meiosis.Frontiers in plant science · 2014Article
- Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics.Asian journal of andrology · 2013Review
- The BioGRID interaction database: 2013 update.Nucleic acids research · 2013Article
- SpermatogenesisOnline 1.0: a resource for spermatogenesis based on manual literature curation and genome-wide data mining.Nucleic acids research · 2013Article
- The Glucocorticoid-induced leucine zipper (GILZ) Is essential for spermatogonial survival and spermatogenesis.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2012Article
- BioMart Central Portal: an open database network for the biological community.Database : the journal of biological databases and curation · 2011Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
GermOnline 4.0 is a cross-species database portal focusing on high-throughput expression data relevant for germline development, the meiotic cell cycle and mitosis in healthy versus malignant cells. It is thus a source of information for life scientists as well as clinicians who are interested in gene expression and regulatory networks. The GermOnline gateway provides unlimited access to information produced with high-density oligonucleotide microarrays (3'-UTR GeneChips), genome-wide protein-DNA binding assays and protein-protein interaction studies in the context of Ensembl genome annotation. Samples used to produce high-throughput expression data and to carry out genome-wide in vivo DNA binding assays are annotated via the MIAME-compliant Multiomics Information Management and Annotation System (MIMAS 3.0). Furthermore, the Saccharomyces Genomics Viewer (SGV) was developed and integrated into the gateway. SGV is a visualization tool that outputs genome annotation and DNA-strand specific expression data produced with high-density oligonucleotide tiling microarrays (Sc_tlg GeneChips) which cover the complete budding yeast genome on both DNA strands. It facilitates the interpretation of expression levels and transcript structures determined for various cell types cultured under different growth and differentiation conditions. Database URL: www.germonline.org/
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