Evidence map›Paper›PMID 21148770›Full record

ArticleRNA (New York, N.Y.)2011

Dcp1 links coactivators of mRNA decapping to Dcp2 by proline recognition.

Mark S Borja, Kirill Piotukh, Christian Freund, John D Gross

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Dcp2 C-terminaleLife · 2022
    Article
  7. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  8. Review
  9. Article
  10. Review
  11. mRNA decapping: finding the right structures.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  12. Control of mRNA decapping by autoinhibition.Nucleic acids research · 2018
    Article
  13. Article
  14. Application of aRNA (New York, N.Y.) · 2018
    Article
  15. A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. New insights into decapping enzymes and selective mRNA decay.Wiley interdisciplinary reviews. RNA · 2017
    Review
  19. Article
  20. Structural basis of mRNA-cap recognition by Dcp1-Dcp2.Nature structural & molecular biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Mark S BorjaProgram in Chemistry and Chemical Biology, University of California, San Francisco, California 94158, USA.
Kirill Piotukh
Christian Freund
John D Gross
Leibniz-Forschungsinstitut für Molekulare Pharmakologie · DEUniversity of California, San Francisco · US

Funding

Maximizing Opportunities for Research Excellence - Evaluation Training SupplementR25GM056847 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DUNCAN, D'ANNE S., SELLO, JASON K · 1998 to 2023
$14.1M
Structure and Function of the Decapping Enzyme ComplexR01GM078360 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, JOHN D · 2009 to 2018
$2.5M
NIGMS NIH HHS 1R25GM56847NIGMS NIH HHS R01 GM078360NIGMS NIH HHS R01GM78360NIGMS NIH HHS R25 GM056847
6 · The paper itself

Abstract

Cap hydrolysis is a critical step in several eukaryotic mRNA decay pathways and is carried out by the evolutionarily conserved decapping complex containing Dcp2 at the catalytic core. In yeast, Dcp1 is an essential activator of decapping and coactivators such as Edc1 and Edc2 are thought to enhance activity, though their mechanism remains elusive. Using kinetic analysis we show that a crucial function of Dcp1 is to couple the binding of coactivators of decapping to activation of Dcp2. Edc1 and Edc2 bind Dcp1 via its EVH1 proline recognition site and stimulate decapping by 1000-fold, affecting both the K(M) for mRNA and rate of the catalytic step. The C-terminus of Edc1 is necessary and sufficient to enhance the catalytic step, while the remainder of the protein likely increases mRNA binding to the decapping complex. Lesions in the Dcp1 EVH1 domain or the Edc1 proline-rich sequence are sufficient to block stimulation. These results identify a new role of Dcp1, which is to link the binding of coactivators to substrate recognition and activation of Dcp2.

Indexed as

Amino Acid SequenceCatalytic DomainEndoribonucleasesKineticsMolecular Sequence DataProlineRNA Cap-Binding ProteinsRNA CapsRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDCP1 protein, S cerevisiaeDCP2 protein, S cerevisiaeEndoribonucleasesProlineRNA Cap-Binding ProteinsRNA CapsRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID21148770
PMCPMC3022277
OpenAlexW2161891259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.