ArticleApplied and environmental microbiology2011
mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization.
Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.
What it found
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Who cites it
94 citing papers in PubMed.
- Potential Innovative Tools for Heritage Conservation: A Novel RNA-FISH Probe and Antimicrobial Peptides for the Detection and Control ofMicroorganisms · 2026Article
- Cross hybridization Inference for Phylogenetic Resolution (CIPHR)-FISH enables microbiome imaging with strain level taxonomic resolution.bioRxiv : the preprint server for biology · 2026Article
- Evolutionary assembly of a unique purple-green photosymbiosis revealed by expanded ciliate diversity.The ISME journal · 2026Article
- Urea use drives niche separation between dominant marine ammonia oxidizing archaea.Nature communications · 2025Article
- Profiling the heterogeneity of microbial populations and communities at the single-cell level.mLife · 2025Review
- The impact of biotic and abiotic interactions on Candidatus Kouleothrix bulking in a full-scale activated sludge anaerobic-anoxic-oxic plant in Japan.Scientific reports · 2025Article
- Diversity and abundance of filamentous and non-filamentous "Applied and environmental microbiology · 2025Article
- Phylogeny-metabolism dual-directed single-cell genomics for dissecting and mining ecosystem function by FISH-scRACS-seq.Innovation (Cambridge (Mass.)) · 2025Article
- The Parkinson's disease drug entacapone disrupts gut microbiome homoeostasis via iron sequestration.Nature microbiology · 2024Article
- Back flux during anaerobic oxidation of butane support archaea-mediated alkanogenesis.Nature communications · 2024Article
- Unique episymbiotic relationship between Candidatus Patescibacteria and Zoogloea in activated sludge flocs at a municipal wastewater treatment plant.Environmental microbiology reports · 2024Article
- Increased biofilm formation in dual-strain compared to single-strain communities of Cutibacterium acnes.Scientific reports · 2024Article
- Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir.Environmental microbiome · 2024Article
- Optical Photothermal Infrared - Fluorescence In Situ Hybridization (OPTIR-FISH).Journal of visualized experiments : JoVE · 2024Article
- Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes.Nature communications · 2024Article
- Ubiquitous genome streamlinedISME communications · 2024Article
- Designing Oligonucleotide-Based FISH Probe Sets with PaintSHOP.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Article
- A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide.mSystems · 2023Review
- The Parkinson's drug entacapone disrupts gut microbiome homeostasis via iron sequestration.bioRxiv : the preprint server for biology · 2023Article
34 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Mathematical models of RNA-targeted fluorescence in situ hybridization (FISH) for perfectly matched and mismatched probe/target pairs are organized and automated in web-based mathFISH (http://mathfish.cee.wisc.edu). Offering the users up-to-date knowledge of hybridization thermodynamics within a theoretical framework, mathFISH is expected to maximize the probability of success during oligonucleotide probe design.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.