Evidence map›Paper›PMID 21147779›Full record

ArticleThe Journal of biological chemistry2011

Structural basis for the oxidation of protein-bound sulfur by the sulfur cycle molybdohemo-enzyme sulfane dehydrogenase SoxCD.

Ulrich Zander, Annette Faust, Björn U Klink, Daniele de Sanctis, Santosh Panjikar, Armin Quentmeier, Frank Bardischewsky, Cornelius G Friedrich, Axel J Scheidig

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 56 citations in OpenAlex.

  1. A Dinuclear Iron(II) Persulfide Complex Reacts with OJournal of the American Chemical Society · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. In the AlphaproteobacteriumAntioxidants (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Metabolites · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Sulfur Oxidation in the Acidophilic AutotrophicFrontiers in microbiology · 2018
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Structural Stability, Transitions, and Interactions within SoxYZCD-Thiosulphate fromJournal of biophysics (Hindawi Publishing Corporation : Online) · 2016
    Article
  20. Structural basis for specificity and promiscuity in a carrier protein/enzyme system from the sulfur cycle.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ulrich ZanderFrom the Department of Structural Biology, Zoological Institute, Christian-Albrechts-University Kiel, 24118 Kiel, Germany,; the Department of Biophysics-Structural Biology, Saarland University, 66421 Homburg, Germany.
Annette FaustFrom the Department of Structural Biology, Zoological Institute, Christian-Albrechts-University Kiel, 24118 Kiel, Germany.
Björn U Klinkthe Department of Biophysics-Structural Biology, Saarland University, 66421 Homburg, Germany.
Daniele de Sanctisthe Structural Biology Group, European Synchrotron Radiation Facility Grenoble, 6 Rue Jules Horowitz, B.P. 220, 38043 Grenoble Cedex 9, France, and.
Santosh Panjikarthe EMBL Hamburg Outstation, c/o DESY, Notkestrasse 85, D-22603 Hamburg, Germany.
Armin Quentmeierthe Fakultät Bio- und Chemieingenieurwesen, Technische Universität Dortmund, Emil-Figge-Strasse 66, 44221 Dortmund, Germany.
Frank Bardischewskythe Fakultät Bio- und Chemieingenieurwesen, Technische Universität Dortmund, Emil-Figge-Strasse 66, 44221 Dortmund, Germany.
Cornelius G Friedrichthe Fakultät Bio- und Chemieingenieurwesen, Technische Universität Dortmund, Emil-Figge-Strasse 66, 44221 Dortmund, Germany,. Electronic address: cornelius.friedrich@udo.edu.
Axel J ScheidigFrom the Department of Structural Biology, Zoological Institute, Christian-Albrechts-University Kiel, 24118 Kiel, Germany,; the Department of Biophysics-Structural Biology, Saarland University, 66421 Homburg, Germany,. Electronic address: axel.scheidig@strubio.uni-kiel.de.
TU Dortmund University · DESaarland University · DEEuropean Molecular Biology Laboratory · DEEuropean Synchrotron Radiation Facility · FRKiel University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sulfur cycle enzyme sulfane dehydrogenase SoxCD is an essential component of the sulfur oxidation (Sox) enzyme system of Paracoccus pantotrophus. SoxCD catalyzes a six-electron oxidation reaction within the Sox cycle. SoxCD is an α(2)β(2) heterotetrameric complex of the molybdenum cofactor-containing SoxC protein and the diheme c-type cytochrome SoxD with the heme domains D(1) and D(2). SoxCD(1) misses the heme-2 domain D(2) and is catalytically as active as SoxCD. The crystal structure of SoxCD(1) was solved at 1.33 Å. The substrate of SoxCD is the outer (sulfane) sulfur of Cys-110-persulfide located at the C-terminal peptide swinging arm of SoxY of the SoxYZ carrier complex. The SoxCD(1) substrate funnel toward the molybdopterin is narrow and partially shielded by side-chain residues of SoxD(1). For access of the sulfane-sulfur of SoxY-Cys-110 persulfide we propose that (i) the blockage by SoxD-Arg-98 is opened via interaction with the C terminus of SoxY and (ii) the C-terminal peptide VTIGGCGG of SoxY provides interactions with the entrance path such that the cysteine-bound persulfide is optimally positioned near the molybdenum atom. The subsequent oxidation reactions of the sulfane-sulfur are initiated by the nucleophilic attack of the persulfide anion on the molybdenum atom that is, in turn, reduced. The close proximity of heme-1 to the molybdopterin allows easy acceptance of the electrons. Because SoxYZ, SoxXA, and SoxB are already structurally characterized, with SoxCD(1) the structures of all key enzymes of the Sox cycle are known with atomic resolution.

Indexed as

Bacterial ProteinsCrystallography, X-RayMolybdenumOxidation-ReductionOxidoreductasesParacoccus pantotrophusPeptidesProtein Structure, QuaternaryProtein Structure, TertiaryStructure-Activity RelationshipSulfurBacterial ProteinsMolybdenumOxidoreductasesPeptidesSulfur

Identifiers

PMID21147779
PMCPMC3048719
OpenAlexW2063092230

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.