Evidence map›Paper›PMID 21145876›Full record

ArticleArchives of biochemistry and biophysics2011

Kinetic and crystallographic studies of the role of tyrosine 7 in the active site of human carbonic anhydrase II.

Rose Mikulski, Balendu Sankara Avvaru, Chingkuang Tu, Nicolette Case, Robert McKenna, David N Silverman

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rose MikulskiDepartment of Pharmacology, University of Florida, Gainesville, FL 32610, USA.
Balendu Sankara Avvaru
Chingkuang Tu
Nicolette Case
Robert McKenna
David N Silverman

Funding

CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
NIGMS NIH HHS GM 25154NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

The rate limiting step in catalysis of bicarbonate dehydration by human carbonic anhydrase II (HCA II) is an intramolecular proton transfer from His64 to the zinc-bound hydroxide. We have examined the role of Tyr7 using site-specific mutagenesis and measuring catalysis by the ¹⁸O exchange method using membrane inlet mass spectrometry. The side chain of Tyr7 in HCA II extends into the active-site cavity about 7 Å from the catalytic zinc atom. Replacement of Tyr7 with eight other amino acids had no effect on the interconversion of bicarbonate and CO₂, but in some cases caused enhancements in the rate constant of proton transfer by nearly 10-fold. The variant Y7I HCA II enhanced intramolecular proton transfer approximately twofold; its structure was determined by X-ray crystallography at 1.5 Å resolution. No changes were observed in the ordered solvent structure in the active-site cavity or in the conformation of the side chain of the proton shuttle His64. However, the first 11 residues of the amino-terminal chain in Y7I HCA II assumed an alternate conformation compared with the wild type. Differential scanning calorimetry showed variants at position 7 had a melting temperature approximately 8 °C lower than that of the wild type.

Indexed as

Amino Acid SubstitutionBicarbonatesCalorimetry, Differential ScanningCarbon DioxideCarbonic Anhydrase IICatalytic DomainCrystallography, X-RayEnzyme StabilityHumansIn Vitro TechniquesKineticsModels, MolecularMutagenesis, Site-DirectedProtonsRecombinant ProteinsThermodynamicsBicarbonatesCarbon DioxideCarbonic Anhydrase IIProtonsRecombinant ProteinsTyrosine

Identifiers

PMID21145876
PMCPMC3044917

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.