Evidence map›Paper›PMID 21143916›Full record

ArticleBMC genomics2010

Knobbed acrosome defect is associated with a region containing the genes STK17b and HECW2 on porcine chromosome 15.

Anu Sironen, Pekka Uimari, Szabolcs Nagy, Sándor Paku, Magnus Andersson, Johanna Vilkki

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Bull Sperm Abnormalities in Practice.Advances in anatomy, embryology, and cell biology · 2025
    Review
  4. Review
  5. Article
  6. Review
  7. Reproduction in South American wild canids-A review.Frontiers in veterinary science · 2022
    Review
  8. Review
  9. STK17B promotes the progression of ovarian cancer.Annals of translational medicine · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Progress of genome wide association study in domestic animals.Journal of animal science and biotechnology · 2012
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Anu SironenAgrifood Research Finland, MTT, Biotechnology and Food Research, Genomics, FI-36100 Jokioinen, Finland. anu.sironen@mtt.fi
Pekka Uimari
Szabolcs Nagy
Sándor Paku
Magnus Andersson
Johanna Vilkki
Agrifood Research Finland · FISemmelweis University · HUUniversity of Helsinki · FIUniversity of Pannonia · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMale infertility is an increasing problem in all domestic species including man. Localization and identification of genes involved in defects causing male infertility provide valuable information of specific events in sperm development. Correct condensation of the sperm head and development of the acrosome are required for fertile sperm. In the Finnish Yorkshire pig population a knobbed acrosome defect (KAD) has been reported which appears to be of genetic origin. In previous studies we have shown that a large number of affected spermatozoa have a cystic swelling anterior to the apical part of the acrosome.

resultsCharacterization of the knobbed acrosome affected sperm revealed that both the acrosomal granules and chromatin are affected. This type of KAD appears to be a previously unknown and serious form of the defect. A genome wide scan with PorcineSNP60 Genotyping BeadChip defined the KAD associated region within 0.7 Mbp on porcine chromosome 15. Two genes, STK17b and HECW2, located within this region were sequenced. The expression of these genes appeared comparable in KA-affected and control boars. The known function of HECW2 in acrosome development highlighted this gene as a good candidate responsible for the KAD. One nonsynonymous SNP was identified within the HECW2 gene. However, as this mutation was found in homozygous state in individuals with normal sperm, this is not likely to be the causal mutation.

conclusionsIn this study we identified two candidate genes for a severe defect affecting both the sperm acrosome and chromatin that causes infertility. One of these genes, HECW2, plays an important role in ubiquitination, a prerequisite for chromatin remodelling and acrosome formation, highlighting the involvement of this gene in the knobbed acrosome defect and male infertility.

Indexed as

Genetic Predisposition to DiseaseAcrosomeAmino Acid SequenceAnimalsBase SequenceChromosomes, MammalianGenome-Wide Association StudyHaplotypesMaleMolecular Sequence DataNerve Tissue ProteinsPolymorphism, Single NucleotideProtein Serine-Threonine KinasesRNA, MessengerSequence AlignmentSus scrofaNerve Tissue ProteinsProtein Serine-Threonine KinasesRNA, Messenger

Identifiers

PMID21143916
PMCPMC3016419
OpenAlexW2086680861

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.