ArticleBMC genomics2010
Recent advances in clustering methods for protein interaction networks.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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Who cites it
55 citing papers in PubMed.
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- Analysis of stress response in multiple bacterial pathogens using a network biology approach.Scientific reports · 2025Article
- Multi-source biological knowledge-guided hypergraph spatiotemporal subnetwork embedding for protein complex identification.Briefings in bioinformatics · 2024Article
- Membrane-bound Heat Shock Protein mHsp70 Is Required for Migration and Invasion of Brain Tumors.Cancer research communications · 2024Article
- Changes in the proteome of Apis mellifera acutely exposed to sublethal dosage of glyphosate and imidacloprid.Environmental science and pollution research international · 2024Article
- Spatiotemporal constrained RNA-protein heterogeneous network for protein complex identification.Briefings in bioinformatics · 2024Article
- Mesenchymal stem cells-derived extracellular vesicles for therapeutics of renal tuberculosis.Scientific reports · 2024Article
- Genome analysis of clinical genotypeThe veterinary quarterly · 2023Article
- miR-21 Targets ASPP2 to Inhibit Apoptosis via CHOP-Mediated Signaling inJournal of oncology · 2023Article
- Small protein complex prediction algorithm based on protein-protein interaction network segmentation.BMC bioinformatics · 2022Article
- Overview of methods for characterization and visualization of a protein-protein interaction network in a multi-omics integration context.Frontiers in molecular biosciences · 2022Review
- An Ensemble Learning Framework for Detecting Protein Complexes From PPI Networks.Frontiers in genetics · 2022Article
- Maximizing cohesion and separation for detecting protein functional modules in protein-protein interaction networks.PloS one · 2020Review
- Exploiting locational and topological overlap model to identify modules in protein interaction networks.BMC bioinformatics · 2019Article
- Protein complexes identification based on go attributed network embedding.BMC bioinformatics · 2018Article
- A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.BMC bioinformatics · 2017Article
- A proximity-based graph clustering method for the identification and application of transcription factor clusters.BMC bioinformatics · 2017Article
- Development of an in silico method for the identification of subcomplexes involved in the biogenesis of multiprotein complexes in Saccharomyces cerevisiae.BMC systems biology · 2017Article
- Different adaptation strategies of two citrus scion/rootstock combinations in response to drought stress.PloS one · 2017Article
- Protein complex prediction for large protein protein interaction networks with the Core&Peel method.BMC bioinformatics · 2016Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The increasing availability of large-scale protein-protein interaction data has made it possible to understand the basic components and organization of cell machinery from the network level. The arising challenge is how to analyze such complex interacting data to reveal the principles of cellular organization, processes and functions. Many studies have shown that clustering protein interaction network is an effective approach for identifying protein complexes or functional modules, which has become a major research topic in systems biology. In this review, recent advances in clustering methods for protein interaction networks will be presented in detail. The predictions of protein functions and interactions based on modules will be covered. Finally, the performance of different clustering methods will be compared and the directions for future research will be discussed.
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