Evidence map›Paper›PMID 21142182›Full record

ArticleBiochemistry2011

A combined global and local approach to elucidate spatial organization of the Mycobacterial ParB-parS partition assembly.

Barnali N Chaudhuri, Sayan Gupta, Volker S Urban, Mark R Chance, Rhijuta D'Mello, Lauren Smith, Kelly Lyons, Jessica Gee

Abstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Emerging applications of small angle solution scattering in structural biology.Protein science : a publication of the Protein Society · 2015
    Review
  4. Article
  5. Synchrotron X-ray footprinting on tour.Journal of synchrotron radiation · 2014
    Article
  6. Article
  7. Small angle neutron scattering for the study of solubilised membrane proteins.The European physical journal. E, Soft matter · 2013
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Barnali N ChaudhuriHauptman Woodward Institute, Buffalo, NY 14203, USA. bchaudhuri@hwi.buffalo.edu
Sayan Gupta
Volker S Urban
Mark R Chance
Rhijuta D'Mello
Lauren Smith
Kelly Lyons
Jessica Gee
Case Western Reserve University · USHauptman-Woodward Medical Research Institute · USOak Ridge National Laboratory · USUniversity at Buffalo, State University of New York · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Center for Synchrotron BiosciencesP41EB001979 · NIBIB · YESHIVA UNIVERSITY · PI CHANCE, MARK R · 2003 to 2008
$5.6M
Radiolytic Footprinting Methods for Structural Mass SpectrometryR01EB009688 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2010 to 2013
$1.1M
NIBIB NIH HHS P30 EB009998NIBIB NIH HHS P30-EB-09998NIBIB NIH HHS P41 EB001979NIBIB NIH HHS R01 EB009688NIBIB NIH HHS R01-EB-09688
6 · The paper itself

Abstract

Combining diverse sets of data at global (size, shape) and local (residue) scales is an emerging trend for elucidating the organization and function of the cellular assemblies. We used such a strategy, combining data from X-ray and neutron scattering with H/D-contrast variation and X-ray footprinting with mass spectrometry, to elucidate the spatial organization of the ParB-parS assembly from Mycobacterium tuberculosis. The ParB-parS participates in plasmid and chromosome segregation and condensation in predivisional bacterial cells. ParB polymerizes around the parS centromere(s) to form a higher-order assembly that serves to recruit cyto-skeletal ParA ATPases and SMC proteins for chromosome segregation. A hybrid model of the ParB-parS was built by combining and correlating computational models with experiment-derived information about size, shape, position of the symmetry axis within the shape, internal topology, DNA-protein interface, exposed surface patches, and prior knowledge. This first view of the ParB-parS leads us to propose how ParB spread on the chromosome to form a larger assembly.

Indexed as

Bacterial ProteinsCentromereChromosome SegregationDNA, BacterialDNA-Binding ProteinsMycobacterium tuberculosisPlasmidsBacterial ProteinsDNA, BacterialDNA-Binding Proteins

Identifiers

PMID21142182
PMCPMC3081668
OpenAlexW1986087739

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.