Evidence map›Paper›PMID 21135120›Full record

ArticleMolecular and cellular biology2011

Poly(A) signals located near the 5' end of genes are silenced by a general mechanism that prevents premature 3'-end processing.

Jiannan Guo, Matthew Garrett, Gos Micklem, Saverio Brogna

Erratum issuedAbstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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  12. Transcription: the epicenter of gene expression.Journal of Zhejiang University. Science. B · 2014
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  19. Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Jiannan GuoSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Matthew Garrett
Gos Micklem
Saverio Brogna

Funding

Wellcome Trust
6 · The paper itself

Abstract

Poly(A) signals located at the 3' end of eukaryotic genes drive cleavage and polyadenylation at the same end of pre-mRNA. Although these sequences are expected only at the 3' end of genes, we found that strong poly(A) signals are also predicted within the 5' untranslated regions (UTRs) of many Drosophila melanogaster mRNAs. Most of these 5' poly(A) signals have little influence on the processing of the endogenous transcripts, but they are very active when placed at the 3' end of reporter genes. In investigating these unexpected observations, we discovered that both these novel poly(A) signals and standard poly(A) signals become functionally silent when they are positioned close to transcription start sites in either Drosophila or human cells. This indicates that the stage when the poly(A) signal emerges from the polymerase II (Pol II) transcription complex determines whether a putative poly(A) signal is recognized as functional. The data suggest that this mechanism, which probably prevents cryptic poly(A) signals from causing premature transcription termination, depends on low Ser2 phosphorylation of the C-terminal domain of Pol II and inefficient recruitment of processing factors.

Indexed as

RNA Processing, Post-Transcriptional5' Untranslated RegionsAnimalsBase SequenceCell LineDrosophila melanogasterGene SilencingHEK293 CellsHumansPolyadenylationRNA, MessengerRNA Polymerase IIRNA PrecursorsSignal TransductionTranscription Initiation Site5' Untranslated RegionsRNA, MessengerRNA Polymerase IIRNA Precursors

Identifiers

PMID21135120
PMCPMC3028650

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.