Evidence map›Paper›PMID 21134645›Full record

ArticleStructure (London, England : 1993)2010

Allosteric activation mechanism of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknB.

T Noelle Lombana, Nathaniel Echols, Matthew C Good, Nathan D Thomsen, Ho-Leung Ng, Andrew E Greenstein, Arnold M Falick, David S King, Tom Alber

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
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  10. Structure of theCurrent research in structural biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

T Noelle LombanaDepartment of Molecular and Cell Biology, QB3 Institute, University of California, Berkeley, CA 94720-3200, USA.
Nathaniel Echols
Matthew C Good
Nathan D Thomsen
Ho-Leung Ng
Andrew E Greenstein
Arnold M Falick
David S King
Tom Alber
University of California, Berkeley · USHoward Hughes Medical Institute · US

Funding

Functions and Mechanisms of M. Tuberculosis S/T KinasesR01GM070962 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ALBER, THOMAS C · 2005 to 2012
$2.2M
NIGMS NIH HHS R01 GM070962NIGMS NIH HHS R01 GM70962
6 · The paper itself

Abstract

The essential Mycobacterium tuberculosis Ser/Thr protein kinase (STPK), PknB, plays a key role in regulating growth and division, but the structural basis of activation has not been defined. Here, we provide biochemical and structural evidence that dimerization through the kinase-domain (KD) N-lobe activates PknB by an allosteric mechanism. Promoting KD pairing using a small-molecule dimerizer stimulates the unphosphorylated kinase, and substitutions that disrupt N-lobe pairing decrease phosphorylation activity in vitro and in vivo. Multiple crystal structures of two monomeric PknB KD mutants in complex with nucleotide reveal diverse inactive conformations that contain large active-site distortions that propagate > 30 Å from the mutation site. These results define flexible, inactive structures of a monomeric bacterial receptor KD and show how "back-to-back" N-lobe dimerization stabilizes the active KD conformation. This general mechanism of bacterial receptor STPK activation affords insights into the regulation of homologous eukaryotic kinases that form structurally similar dimers.

Indexed as

Allosteric RegulationCatalytic DomainEnzyme ActivationModels, BiologicalModels, MolecularMolecular Sequence DataMycobacterium tuberculosisPhosphorylationProtein ConformationProtein MultimerizationProtein Serine-Threonine KinasesProtein Structure, QuaternaryProtein Structure, SecondaryPknB protein, Mycobacterium tuberculosisProtein Serine-Threonine Kinases

Identifiers

PMID21134645
PMCPMC3181147
OpenAlexW2016021369

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.