Evidence map›Paper›PMID 21134637›Full record

ArticleStructure (London, England : 1993)2010

In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography.

Chi-Yu Fu, Kang Wang, Lu Gan, Jason Lanman, Reza Khayat, Mark J Young, Grant J Jensen, Peter C Doerschuk, John E Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Viruses of theFrontiers in microbiology · 2023
    Review
  4. Article
  5. Article
  6. A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Atomic cryo-EM structures of viruses.Current opinion in structural biology · 2017
    Review
  13. Review
  14. Article
  15. Article
  16. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  17. Review
  18. Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
  20. Functional interplay between a virus and the ESCRT machinery in archaea.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Chi-Yu FuDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Kang Wang
Lu Gan
Jason Lanman
Reza Khayat
Mark J Young
Grant J Jensen
Peter C Doerschuk
John E Johnson
Scripps Research Institute · USCornell University · USCalifornia Institute of Technology · USHoward Hughes Medical Institute · USMontana State University · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Studies of large and small-scale virus capsid dynamicsR01GM054076 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 1995 to 2014
$6.2M
Structure and function of the prokaryotic cytoskeleton by electron cryotomographyR01GM094800 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI JENSEN, GRANT J · 2011 to 2015
$1.7M
NCRR NIH HHS P41 RR017573NIGMS NIH HHS GM082545NIGMS NIH HHS GM54076NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM054076NIGMS NIH HHS R01 GM094800
6 · The paper itself

Abstract

We applied whole-cell electron cryotomography to the archaeon Sulfolobus infected by Sulfolobus turreted icosahedral virus (STIV), which belongs to the PRD1-Adeno lineage of dsDNA viruses. STIV infection induced the formation of pyramid-like protrusions with sharply defined facets on the cell surface. They had a thicker cross-section than the cytoplasmic membrane and did not contain an exterior surface protein layer (S-layer). Intrapyramidal bodies often occupied the volume of the pyramids. Mature virions, procapsids without genome cores, and partially assembled particles were identified, suggesting that the capsid and inner membrane coassemble in the cytoplasm to form a procapsid. A two-class reconstruction using a maximum likelihood algorithm demonstrated that no dramatic capsid transformation occurred upon DNA packaging. Virions tended to form tightly packed clusters or quasicrystalline arrays while procapsids mostly scattered outside or on the edges of the clusters. The study revealed vivid images of STIV assembly, maturation, and particle distribution in cell.

Indexed as

Archaeal VirusesCapsid ProteinsComputer SimulationCryoelectron MicroscopyElectron Microscope TomographyLikelihood FunctionsModels, BiologicalSulfolobusTissue DistributionViral ProteinsVirionVirus AssemblyCapsid ProteinsViral Proteins

Identifiers

PMID21134637
PMCPMC3042139
OpenAlexW2131145661

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.