Evidence map›Paper›PMID 21134112›Full record

ArticleLiver international : official journal of the International Association for the Study of the Liver2011

Genetic polymorphisms of matrix metalloproteinase 3 in primary sclerosing cholangitis.

Brian D Juran, Elizabeth J Atkinson, Erik M Schlicht, Joseph J Larson, David Ellinghaus, Andre Franke, Konstantinos N Lazaridis

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Liver international : official journal of the International Association for the Study of the Liver, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01161992 (P.R.O.G.R.E.S.S.), which is not on this map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01161992 completednot on this map

P.R.O.G.R.E.S.S.: PSC Resource Of Genetic Risk, Environment and Synergy Studies.

TypeobservationalSponsorMayo ClinicRan2002 to 2025Enrolled1,500ConditionsPrimary Sclerosing Cholangitis (PSC)ArmsGenetic Analysis
3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Association betweenOncotarget · 2017
    Article
  6. Article
  7. Matrix Metalloproteinases in Non-Neoplastic Disorders.International journal of molecular sciences · 2016
    Review
  8. Article
  9. Review
  10. Reduced coffee consumption among individuals with primary sclerosing cholangitis but not primary biliary cirrhosis.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2014
    Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Brian D JuranCenter for Basic Research in Digestive Diseases, Division of Gastroenterology and Hepatology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Elizabeth J Atkinson
Erik M Schlicht
Joseph J Larson
David Ellinghaus
Andre Franke
Konstantinos N Lazaridis
Mayo Clinic · USKiel University · DE

Funding

PSC Resource Of Genetic Risk, Environment and Synergy Studies (PROGRESS)R01DK084960 · NIDDK · MAYO CLINIC ROCHESTER · PI LAZARIDIS, KONSTANTINOS N · 2010 to 2014
$3.0M
NIDDK NIH HHS R01 DK084960NIDDK NIH HHS R01DK084960
6 · The paper itself

Abstract

backgroundThe damaging cholestasis inherent to primary sclerosing cholangitis (PSC) results from bile duct stricturing because of progressive fibrosis. The matrix metalloproteinase 3 (MMP3) degrades a wide range of matrix components and is expressed by activated liver stellate cells, and so is a candidate for involvement with the fibrotic processes underlying PSC. Moreover, the MMP3 gene harbours polymorphisms associated with variation in its activity directly impacting clinical phenotypes.

aimsWe aimed to examine the influence of MMP3 polymorphisms on PSC risk and progression.

methodsNine single nucleotide polymorphisms (SNPs) tagging the common genetic variation of MMP3 were genotyped in 266 PSC patients and 407 controls. SNPs and inferred haplotypes were assessed for PSC association by logistic regression and score tests. The effect of SNPs on survival to liver transplant or death was analysed using Cox regression, and Kaplan-Meier curves were constructed.

resultsNo association of PSC with individual SNPs or haplotypes of MMP3 was detected. However, progression to death or liver transplant was significantly associated with homozygosity for minor alleles of rs522616, rs650108 and rs683878, particularly among PSC patients with concurrent ulcerative colitis (UC) (strongest in redundant SNPs rs650108/rs683878, hazard ratio=3.23, 95% confidence interval 1.45-7.25, P=0.004).

conclusionsGenetic variation in MMP3 influences PSC progression, possibly in the context of coexisting UC. While the functional variants and specific mechanisms remain unknown, this finding implicates the turnover of the extracellular matrix as an important and variable component of PSC pathogenesis. Efforts to understand this process could form the basis for developing effective treatments, which are currently lacking for PSC.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAgedAged, 80 and overCase-Control StudiesChildCholangitis, SclerosingColitis, UlcerativeComorbidityDisease ProgressionFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseHaplotypesMatrix Metalloproteinase 3MMP3 protein, human

Identifiers

PMID21134112
PMCPMC3139245
OpenAlexW1858773867

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.