ReviewNature reviews. Microbiology2011
In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.
Review in Nature reviews. Microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 50 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
50 citing papers in PubMed.
- Microbially mediated metal corrosion.Nature reviews. Microbiology · 2023Review
- Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology.Science advances · 2022Article
- Microbiomics for enhancing electron transfer in an electrochemical system.Frontiers in microbiology · 2022Review
- Engineering Cooperation in an Anaerobic Coculture.Applied and environmental microbiology · 2021Article
- Key Enzymes for Anaerobic Lactate Metabolism in Geobacter sulfurreducens.Applied and environmental microbiology · 2021Article
- Comparative proteomics of Geobacter sulfurreducens PCAEnvironmental microbiology · 2021Article
- Proteomic Analysis of a Syntrophic Coculture ofFrontiers in microbiology · 2021Article
- Reconstructing organisms in silico: genome-scale models and their emerging applications.Nature reviews. Microbiology · 2020Review
- Sequential biodegradation of 1,2,4-trichlorobenzene at oxic-anoxic groundwater interfaces in model laboratory columns.Journal of contaminant hydrology · 2020Article
- Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment.Scientific reports · 2020Article
- Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes.Environmental microbiology reports · 2020Article
- Review
- Construction of aFrontiers in microbiology · 2018Article
- Article
- Electron acceptor redox potential globally regulates transcriptomic profiling in Shewanella decolorationis S12.Scientific reports · 2016Article
- Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediation.The ISME journal · 2016Article
- Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data.BioMed research international · 2016Article
- Thermodynamics and H2 Transfer in a Methanogenic, Syntrophic Community.PLoS computational biology · 2015Article
- Metabolic Profiling of Geobacter sulfurreducens during Industrial Bioprocess Scale-Up.Applied and environmental microbiology · 2015Article
- Sulfur-cycling fossil bacteria from the 1.8-Ga Duck Creek Formation provide promising evidence of evolution's null hypothesis.Proceedings of the National Academy of Sciences of the United States of America · 2015Article
Corrections and comments
- Erratum issued
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
There is a wide diversity of unexplored metabolism encoded in the genomes of microorganisms that have an important environmental role. Genome-scale metabolic modelling enables the individual reactions that are encoded in annotated genomes to be organized into a coherent whole, which can then be used to predict metabolic fluxes that will optimize cell function under a range of conditions. In this Review, we summarize a series of studies in which genome-scale metabolic modelling of Geobacter spp. has resulted in an in-depth understanding of their central metabolism and ecology. A similar iterative modelling and experimental approach could accelerate elucidation of the physiology and ecology of other microorganisms inhabiting a diversity of environments, and could guide optimization of the practical applications of these species.
Indexed as
Identifiers
21132020What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.