Evidence map›Paper›PMID 21131971›Full record

ArticleNature chemical biology2011

Structural basis for regulation of the Crk signaling protein by a proline switch.

Paramita Sarkar, Tamjeed Saleh, Shiou-Ru Tzeng, Raymond B Birge, Charalampos G Kalodimos

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. AssessingPharmaceutics · 2023
    Article
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  4. Article
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  6. Non-Immunosuppressive Cyclophilin Inhibitors.Angewandte Chemie (International ed. in English) · 2022
    Review
  7. Article
  8. Article
  9. Subcellular localization of mutated β-catenins with different incidences ofFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Paramita SarkarDepartment of Chemistry & Chemical Biology, Rutgers University, Piscataway, New Jersey, USA.
Tamjeed Saleh
Shiou-Ru Tzeng
Raymond B Birge
Charalampos G Kalodimos
Rutgers, The State University of New Jersey · USQuantitative BioSciences · USRutgers New Jersey Medical School

Funding

Regulatory mechanisms of the Crk Adapter proteinR01GM080308 · NIGMS · UNIVERSITY OF MINNESOTA · PI KALODIMOS, CHARALAMPOS · 2007 to 2015
$2.7M
NIGMS NIH HHS GM80308NIGMS NIH HHS R01 GM080308
6 · The paper itself

Abstract

Proline switches, controlled by cis-trans isomerization, have emerged as a particularly effective regulatory mechanism in a wide range of biological processes. Here we report the structures of both the cis and trans conformers of a proline switch in the Crk signaling protein. Proline isomerization toggles Crk between two conformations: an autoinhibitory conformation, stabilized by the intramolecular association of two tandem SH3 domains in the cis form, and an uninhibited, activated conformation promoted by the trans form. In addition to acting as a structural switch, the heterogeneous proline recruits cyclophilin A, which accelerates the interconversion rate between the isomers, thereby regulating the kinetics of Crk activation. The data provide atomic insight into the mechanisms that underpin the functionality of this binary switch and elucidate its remarkable efficiency. The results also reveal new SH3 binding surfaces, highlighting the binding versatility and expanding the noncanonical ligand repertoire of this important signaling domain.

Indexed as

Cyclophilin AIsomerismLigandsProlineProtein BindingProtein ConformationProto-Oncogene Proteins c-crkSignal Transductionsrc Homology DomainsCRK protein, humanCyclophilin ALigandsProlineProto-Oncogene Proteins c-crk

Identifiers

PMID21131971
PMCPMC3039521
OpenAlexW1968824596

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.