Evidence map›Paper›PMID 21131284›Full record

ArticleNucleic acids research2011

The docking domain of histone H2A is required for H1 binding and RSC-mediated nucleosome remodeling.

Manu Shubhdarshan Shukla, Sajad Hussain Syed, Damien Goutte-Gattat, John Lalith Charles Richard, Fabien Montel, Ali Hamiche, Andrew Travers, Cendrine Faivre-Moskalenko, Jan Bednar, Jeffrey J Hayes and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 66 citations in OpenAlex.

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  10. Correlating histone acetylation with nucleosome core particle dynamics and function.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Manu Shubhdarshan ShuklaUniversité Joseph Fourier-Grenoble 1, France.
Sajad Hussain Syed
Damien Goutte-Gattat
John Lalith Charles Richard
Fabien Montel
Ali Hamiche
Andrew Travers
Cendrine Faivre-Moskalenko
Jan Bednar
Jeffrey J Hayes
Dimitar Angelov
Stefan Dimitrov
Laboratoire de Biologie et Modélisation de la Cellule · FRCentre National de la Recherche Scientifique · FRLaboratoire de Physique de l'ENS de Lyon · FRUniversité Claude Bernard Lyon 1 · FRInserm · FRUniversité Grenoble Alpes · FRUniversité Joseph Fourier · FR

Funding

Histone Tall Interactions and Functions in ChromatinR01GM052426 · NIGMS · UNIVERSITY OF ROCHESTER · PI HAYES, JEFFREY J · 1995 to 2021
$6.2M
NIGMS NIH HHS R01 GM052426
6 · The paper itself

Abstract

Histone variants within the H2A family show high divergences in their C-terminal regions. In this work, we have studied how these divergences and in particular, how a part of the H2A COOH-terminus, the docking domain, is implicated in both structural and functional properties of the nucleosome. Using biochemical methods in combination with Atomic Force Microscopy and Electron Cryo-Microscopy, we show that the H2A-docking domain is a key structural feature within the nucleosome. Deletion of this domain or replacement with the incomplete docking domain from the variant H2A.Bbd results in significant structural alterations in the nucleosome, including an increase in overall accessibility to nucleases, un-wrapping of ∼10 bp of DNA from each end of the nucleosome and associated changes in the entry/exit angle of DNA ends. These structural alterations are associated with a reduced ability of the chromatin remodeler RSC to both remodel and mobilize the nucleosomes. Linker histone H1 binding is also abrogated in nucleosomes containing the incomplete docking domain of H2A.Bbd. Our data illustrate the unique role of the H2A-docking domain in coordinating the structural-functional aspects of the nucleosome properties. Moreover, our data suggest that incorporation of a 'defective' docking domain may be a primary structural role of H2A.Bbd in chromatin.

Indexed as

Chromatin Assembly and DisassemblyDNADNA-Binding ProteinsHistonesNucleosomesProtein BindingProtein Structure, TertiarySaccharomyces cerevisiae ProteinsSequence DeletionTranscription FactorsDNADNA-Binding ProteinsHistonesNucleosomesRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID21131284
PMCPMC3074127
OpenAlexW1976420166

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.