Evidence map›Paper›PMID 21131274›Full record

ArticleNucleic acids research2011

Divergent GW182 functional domains in the regulation of translational silencing.

Bing Yao, Songqing Li, Hyun Min Jung, Shang L Lian, Grant X Abadal, Frank Han, Marvin J Fritzler, Edward K L Chan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Capturing microRNA targets using an RNA-induced silencing complex (RISC)-trap approach.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. MicroRNA in TLR signaling and endotoxin tolerance.Cellular & molecular immunology · 2011
    Review
  18. MicroRNAs in systemic rheumatic diseases.Arthritis research & therapy · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Bing YaoDepartment of Oral Biology, University of Florida, Gainesville, FL 32610-0424, USA.
Songqing Li
Hyun Min Jung
Shang L Lian
Grant X Abadal
Frank Han
Marvin J Fritzler
Edward K L Chan
University of Florida · USUniversity of Calgary · CA

Funding

NRSA Institutional Training Program in Oral BiologyT32DE007200 · NIDCR · UNIVERSITY OF FLORIDA · PI BURNE, ROBERT A · 1990 to 2010
$4.2M
Novel Proteins Associated with SS-A/Ro in Target OrgansR01AI047859 · NIAID · UNIVERSITY OF FLORIDA · PI CHAN, EDWARD K · 2001 to 2011
$3.1M
NOVEL PROTEINS ASSOCIATED WITH SS-A/RO IN TARGET ORGANSR21AI047859 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI CHAN, EDWARD K · 2000 to 2000
$310k
CIHR MOP-38034Howard Hughes Medical InstituteNIAID NIH HHS AI47859NIAID NIH HHS R01 AI047859NIAID NIH HHS R21 AI047859NIDCR NIH HHS T32 DE007200
6 · The paper itself

Abstract

MicroRNA (miRNA)-mediated gene regulation has become a major focus in many biological processes. GW182 and its long isoform TNGW1 are marker proteins of GW/P bodies and bind to Argonaute proteins of the RNA induced silencing complex. The goal of this study is to further define and distinguish the repression domain(s) in human GW182/TNGW1. Two non-overlapping regions, Δ12 (amino acids 896-1219) containing the Ago hook and Δ5 (amino acids 1670-1962) containing the RRM, both induced comparable silencing in a tethering assay. Mapping data showed that the RRM and its flanking sequences in Δ5, but not the Ago hook in Δ12, were important for silencing. Repression mediated by Δ5 or Δ12 was not differentially affected when known endogenous repressors RCK/p54, GW182/TNGW1, TNRC6B were depleted. Transfected Δ5, but not Δ12, enhanced Ago2-mediated repression in a tethering assay. Transfected Δ12, but not Δ5, released endogenous miRNA reporter silencing without affecting siRNA function. Alanine substitution showed that GW/WG motifs in Δ12 (Δ12a, amino acids 896-1045) were important for silencing activity. Although Δ12 appeared to bind PABPC1 more efficiently than Δ5, neither Δ5 nor Δ12 significantly enhanced reporter mRNA degradation. These different functional characteristics of Δ5 and Δ12 suggest that their roles are distinct, and possibly dynamic, in human GW182-mediated silencing.

Indexed as

Protein BiosynthesisRNA InterferenceAmino Acid MotifsArgonaute ProteinsAutoantigensCell LineEukaryotic Initiation Factor-2HumansMicroRNAsPoly(A)-Binding Protein IProtein Structure, TertiaryRNA-Binding ProteinsRNA, MessengerRNA StabilitySequence DeletionAGO2 protein, humanArgonaute ProteinsAutoantigensEukaryotic Initiation Factor-2MicroRNAsPoly(A)-Binding Protein IRNA-Binding ProteinsRNA, MessengerTNRC6A protein, human

Identifiers

PMID21131274
PMCPMC3074120
OpenAlexW2022933846

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.