Evidence map›Paper›PMID 21130483›Full record

ArticleVirology2011

Structure and sequence of the saimiriine herpesvirus 1 genome.

Shaun Tyler, Alberto Severini, Darla Black, Matthew Walker, R Eberle

Abstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Understanding Primate Herpesviruses.Journal of emerging diseases and virology · 2017
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Shaun TylerNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada. Shaun_Tyler@phac-aspc.gc.ca
Alberto Severini
Darla Black
Matthew Walker
R Eberle
Oklahoma State University · USPublic Health Agency of Canada · CAUniversity of Manitoba · CA

Funding

CORE--BABOON RESEARCH RESOURCE PROGRAMP40RR012317 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WHITE, GARY L · 1998 to 2011
$13.0M
VIBROSTIMULATION IS SUPERIOR TO ELECTRO EJACULATION IN MONKEYS: COLLECT SPERMP40RR001254 · NCRR · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ABEE, CHRISTIAN R · 1985 to 2011
$8.8M
NCRR NIH HHS P40 RR001254NCRR NIH HHS P40 RR012317NCRR NIH HHS P40 RR01254NCRR NIH HHS P40 RR12317
6 · The paper itself

Abstract

We report here the complete genome sequence of the squirrel monkey α-herpesvirus saimiriine herpesvirus 1 (HVS1). Unlike the simplexviruses of other primate species, only the unique short region of the HVS1 genome is bounded by inverted repeats. While all Old World simian simplexviruses characterized to date lack the herpes simplex virus RL1 (γ34.5) gene, HVS1 has an RL1 gene. HVS1 lacks several genes that are present in other primate simplexviruses (US8.5, US10-12, UL43/43.5 and UL49A). Although the overall genome structure appears more like that of varicelloviruses, the encoded HVS1 proteins are most closely related to homologous proteins of the primate simplexviruses. Phylogenetic analyses confirm that HVS1 is a simplexvirus. Limited comparison of two HVS1 strains revealed a very low degree of sequence variation more typical of varicelloviruses. HVS1 is thus unique among the primate α-herpesviruses in that its genome has properties of both simplexviruses and varicelloviruses.

Indexed as

Genome, ViralAnimalsBase SequenceChlorocebus aethiopsGene Expression Regulation, ViralGenetic VariationOpen Reading FramesSaguinusSaimiriSimplexvirusTranscription Initiation SiteVero CellsViral ProteinsViral Proteins

Identifiers

PMID21130483
PMCPMC3017652
OpenAlexW2042088141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.